Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: RNA-Seq analysis of Lens culinaris Medik. in response to Rizoctonia bataticola infection

PROVIDER: PRJNA779234 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR16897924_1.fastq.gz	Fastqsanger.gz
	SRR16897924_2.fastq.gz	Fastqsanger.gz
	SRR16897925_1.fastq.gz	Fastqsanger.gz
	SRR16897925_2.fastq.gz	Fastqsanger.gz
	SRR16897926_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 8

Similar Datasets

Project description:Lens culinaris annotation RNA-seq

| PRJNA434239 | ENA

Project description:Haragopal Dutta, GP Mishra, HK Dikshit and M. Aski. RNA Seq analysis for seed size variation in lentil (Lens culinaris Medik.)

| PRJNA800200 | ENA

Project description:Deciphering the Intricate Regulatory Network of Rust (Uromyces viciae-fabae) Resistance in Lentil (Lens culinaris Medik.) Through Comparative RNA-Seq Analysis

| PRJNA1061346 | ENA

Lens culinaris subsp. culinaris

Project description:Lens culinaris subsp. culinaris Variation

| PRJNA528610 | ENA

Lens culinaris subsp. culinaris

Project description:Lens culinaris subsp. culinaris Variation

| PRJNA522236 | ENA

Comparative RNA-seq analysis of the drought-sensitive lentil (Lens culinaris) root and leaf under short- and long-term water deficits

Project description:Drought stress is one of the main environmental factors that affects growth and productivity of crop plants, including lentil. To gain insights into the genome-wide transcriptional regulation in lentil root and leaf under short- and long-term drought conditions, we performed RNA-seq on a drought-sensitive lentil cultivar (Lens culinaris Medik. cv. Sultan). After establishing drought conditions, lentil samples were subjected to de novo RNA-seq-based transcriptome analysis. The 207,076 gene transcripts were successfully constructed by de novo assembly from the sequences obtained from root, leaf, and stems. Differentially expressed gene (DEG) analysis on these transcripts indicated that period of drought stress had a greater impact on the transcriptional regulation in lentil root. The numbers of DEGs were 2915 under short-term drought stress while the numbers of DEGs were increased to 18,327 under long-term drought stress condition in the root. Further, Gene Ontology analysis revealed that the following biological processes were differentially regulated in response to long-term drought stress: protein phosphorylation, embryo development seed dormancy, DNA replication, and maintenance of root meristem identity. Additionally, DEGs, which play a role in circadian rhythm and photoreception, were downregulated suggesting that drought stress has a negative effect on the internal oscillators which may have detrimental consequences on plant growth and survival. Collectively, this study provides a detailed comparative transcriptome response of drought-sensitive lentil strain under short- and long-term drought conditions in root and leaf. Our finding suggests that not only the regulation of genes in leaves is important but also genes regulated in roots are important and need to be considered for improving drought tolerance in lentil.

2019-04-19 | GSE115199 | GEO

Genome-wide identification and tissue-specific profiling of microRNAs in lentil (Lens culinaris Medik.)

Project description:Genome-wide identification and tissue-specific profiling of microRNAs in lentil (Lens culinaris Medik.)

| PRJNA1415174 | ENA

Lens culinaris

Project description:Lens culinaris Map

| PRJNA36533 | ENA

Lens culinaris

Project description:Lens culinaris Metagenome

| PRJNA813150 | ENA

Lens culinaris

Project description:Lens culinaris Map