Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: bacteria from brain abscess samples Metagenome

PROVIDER: PRJNA785100 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR17082922_1.fastq.gz	Fastqsanger.gz
	SRR17082922_2.fastq.gz	Fastqsanger.gz
	SRR17082923_1.fastq.gz	Fastqsanger.gz
	SRR17082923_2.fastq.gz	Fastqsanger.gz
	SRR17108608_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

Project description:Perianal abscess samples

| PRJNA1120246 | ENA

Project description:Perianal abscess skin samples

| PRJNA1273337 | ENA

Integrative proteomic and metabonomic profiling elucidate amino acid and lipid metabolism disorder in CA-MRSA infected human breast abscesses

Project description:The CA-MRSA- or MSSA-infected pus samples of breast abscess were collected for the followed dual-omics studies. For label-free analysis, five CAMRSA and five MSSA samples were used, followed by PRM validation of candidate biomarkers.

2024-01-26 | PXD046678 | Pride

Soil metagenome from avocado orchards in Channybearup, Western Australia in 2024

Project description:Metagenome data from soil samples were collected at 0 to 10cm deep from 2 avocado orchards in Channybearup, Western Australia, in 2024. Amplicon sequence variant (ASV) tables were constructed based on the DADA2 pipeline with default parameters.

2025-06-15 | GSE298403 | GEO

uncultured bacterium

Project description:Targeted gene survey from a brain abscess

| PRJNA30525 | ENA

Segatella oris

Project description:A case report of patients with brain abscess

| PRJNA1057750 | ENA

Streptococcus constellatus subsp. constellatus

Project description:Relationship between oral bacteria and Pulmonary Abscess/Pyothorax

| PRJDB7095 | ENA

Defining the Secrebiome: the expressed secretome of the gut microbiome and its role in obese Mexican children

Project description:high throughput sequencing of the metagenome of mexican children

2020-03-16 | GSE143207 | GEO

Neutrophil-derived IL-1β is sufficient for abscess formation in immunity against Staphylococcus aureus in mice

Project description:Neutrophil abscess formation is critical in innate immunity against many pathogens. Here, the mechanism of neutrophil abscess formation was investigated using a mouse model of Staphylococcus aureus cutaneous infection. Gene expression analysis of S. aureus-infected skin revealed that induction of neutrophil recruitment genes was largely dependent upon IL-1beta/IL-1R activation. Unexpectedly, using IL 1beta reporter mice, neutrophils were identified as the primary source of IL-1beta at the site of infection. Furthermore, IL-1beta-producing neutrophils were necessary and sufficient for abscess formation and bacterial clearance. S. aureus-induced IL 1beta production by neutrophils required TLR2, NOD2, FPRs and the ASC/NLRP3 inflammasome. Taken together, IL-1beta and neutrophil abscess formation during an infection are functionally, spatially and temporally linked as a consequence of direct IL-1beta production by neutrophils.

2012-12-05 | GSE36826 | GEO

Project description:abscess wall metagenome raw sequence reads

| PRJNA908993 | ENA