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Genome-wide maps of chromatin openness in control and LMNA R527C mutant MSCs

ABSTRACT: Genome-wide maps of chromatin openness in control and LMNA R527C mutant MSCs

PROVIDER: PRJNA786250 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR17133693_1.fastq.gz	Fastqsanger.gz
	SRR17133693_2.fastq.gz	Fastqsanger.gz
	SRR17133694_1.fastq.gz	Fastqsanger.gz
	SRR17133694_2.fastq.gz	Fastqsanger.gz

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Genome-wide maps of chromatin openness in control and LMNA R527C mutant MSCs

Project description:We performed ATAC-seq to examine to chromatin of openness of coding genes in healthy control and LMNA R527C patient-derived MSCs. The reduction of LADs did not increase the accessibility of the promoters flanking coding genes. The genome wide analysis of ATAC-seq showed that openness of coding genes related chromatin was decreased in mutant MSCs.Thus, R527C mutant Lamin A led to dysfunction of LADs and dysregulation of gene transcription, probably, leading to slow down or arrest of cell proliferation and differentiation.

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Genome-wide maps of LADs distribution in control and Dam-WT/Dam-R527C LMNA stabilized Hela cells

Project description:To determine if LMNA R527C mutation affect the arrangement and function of LADs, we performed Lamin A DamID-seq in wild type and mutant LMNA-stablized Hela cells. Reads of Lamin A ChIP-seq in LADs were decreased in mutant cells compared with wild type. These data suggested that the binding affinity of Lamin A to LADs was reduced after R527C mutation

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Genome-wide maps of Lamin A-LADs binding affinity in control and LMNA R527C mutant MSCs

Project description:Genome-wide maps of Lamin A-LADs binding affinity in control and LMNA R527C mutant MSCs

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Project description:We reprogramed patient derived PBMCs into iPSCs, and differentiated the iPSCs into Mesenchymal stem cells. We performed whole genome wide RNA-seq of patient-derived MSCs and control MSCs. Up-regulated and down-regulated genes of LMNAR527C/R527C patient-derived MSCs were enriched and analyzed.

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