Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

The virome of the wild ticks in Hainan island

ABSTRACT: The virome of the wild ticks in Hainan island Raw sequence reads

PROVIDER: PRJNA793118 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR17422318_1.fastq.gz	Fastqsanger.gz
	SRR17422318_2.fastq.gz	Fastqsanger.gz
	SRR17422319_1.fastq.gz	Fastqsanger.gz
	SRR17422319_2.fastq.gz	Fastqsanger.gz
	SRR17422320_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 36

Similar Datasets

The rodent virome in Hainan island, China

Project description:The rodent virome in Hainan island, China Raw sequence reads

| PRJNA892773 | ENA

The virome of the wild ticks in neimenggu, China

Project description:The virome of the wild ticks in neimenggu, China Raw sequence reads

| PRJNA875608 | ENA

Norfolk Island shark virome

Project description:Norfolk Island shark virome Metagenome

| PRJNA850813 | ENA

Hainan Island tidal flat regions

Project description:Metagenomic assembled genomes of Hainan Island tidal flat regions

| PRJNA1030130 | ENA

Expression data from fully engorged Haemaphysalis flava ticks (FE) midgut and partially engorged Haemaphysalis flava ticks (PE) midgut (MGs)

Project description:To characterize the differentially expressed genes between fully engorged ticks and partially engorged ticks

2015-09-30 | GSE69721 | GEO

Virome survey of the bat, Rhinolophus affinis, in Hainan Province, China

Project description:Virome survey of the bat, Rhinolophus affinis, in Hainan Province, China Raw sequence reads

| PRJNA1016070 | ENA

ticks

Project description:Ticks and Tick-borne agents on wild animals in Laikipia, Kenya

| PRJNA723835 | ENA

Expression data from engorged Haemaphysalis flava ticks (ET) salivary gland and semi-engorged Haemaphysalis flava ticks (SET) salivary gland (SGs)

Project description:To characterize the differentially expressed genes between engorged ticks and semi-engorged ticks

2018-01-01 | GSE67247 | GEO

Morphological and Molecular Identification of Hard Ticks in Hainan Island, China.

Project description:Ticks are small, blood-sucking arachnids, known vectors of various diseases, and found throughout the world. They are distributed basically in almost all regions of China. At present, there is not much information regarding tick species on Hainan Island. They were subjected to morphological identification and imaging on an individual basis. Molecular phylogenetic analyses, based on cox1 and 16S rRNA genes, were utilized to identify the species and determine their approximate phylogenetic origin and genetic diversity. The genomic DNA of tick species was extracted, and cytochrome oxidase subunit 1 (cox1) and 16S ribosomal RNA (rRNA) genes were amplified and sequenced. The identification of five tick species, namely Rhipicephalus microplus, Rhipicephalus sanguineus, Rhipicephalus haemaphysaloides, Haemaphysalis cornigera and Haemaphysalis mageshimaensis, was carried out by morphological analysis. When employing the cox1 and 16S rRNA phylogenetic tree, all isolates of R. microplus from Hainan Island were classified as clade A and B, respectively. R. sanguineus was recognized as a member of the tropical lineage by phylogenetic analysis on the cox1 and 16S rRNA genes. Three phylogenetic groups of R. haemaphysaloides were recognized and found to be related closely to strains from China. H. cornigera and H. mageshimaensis formed one phylogenetic group, presumably from tick strains prevalent in Japan and China. The haplotype network analysis indicated that R. microplus is classed into 26 and 6 haplotypes, which correspond to cox1 and 16S rRNA gene assemblages, respectively. In addition, four cox1 haplotypes were detected in R. sanguineus. This is the first evidence that suggests genetic diversity, host range and geographical distribution of hard ticks in Hainan Island, China.

| S-EPMC10454830 | biostudies-literature

Project description:RNA virome of ticks in Hainan Province, China

| PRJNA1139691 | ENA