Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Poly(A+) RNAs 3'-seq analysis in control and U1-specific proteins KD (knock-down) samples

ABSTRACT: poly(A+) RNAs 3'-seq analysis in control and U1-specific proteins KD (knock-down) samples

PROVIDER: PRJNA793262 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR17385237_1.fastq.gz	Fastqsanger.gz
	SRR17385237_2.fastq.gz	Fastqsanger.gz
	SRR17385238_1.fastq.gz	Fastqsanger.gz
	SRR17385238_2.fastq.gz	Fastqsanger.gz
	SRR17385239_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 16

Similar Datasets

poly(A+) RNAs 3'-seq analysis in control and U1-specific proteins KD (knock-down) samples

Project description:To understand the effect of U1 snRNP-specific proteins on poly(A+) RNAs profiles, we carried out control and U1A, U1C, U1-70k depletion (using synthetic siRNAs) experiments followed by poly(A+) RNA 3'-seq anlyais using lexogen kit (016.024)in HeLa cells

2023-02-27 | GSE192820 | GEO

poly(A+) RNAs 3'-seq analysis in control and FUS KD (knock-down) samples

Project description:To understand the effect of FUS protein knock-down on poly(A+) RNAs profiles, we carried out control and FUS depletion (using synthetic siRNAs) experiments followed by poly(A+) RNA 3'-seq anlyais using lexogen kit (016.024)in HeLa cells

2023-02-27 | GSE192821 | GEO

poly(A+) RNAs 3'-seq analysis in control and FUS KD (knock-down) samples

Project description:poly(A+) RNAs 3'-seq analysis in control and FUS KD (knock-down) samples

| PRJNA793266 | ENA

FGFR3 knock-down

Project description:FGFR3 knock-down

| PRJNA330963 | ENA

SPARC knock down

Project description:SPARC knock down

| PRJNA327124 | ENA

Development of gene expression signatures for glioblastoma with circ2082 knock-down (KD)

Project description:Development of gene expression signatures for glioblastoma with circ2082 knock-down (KD)

| PRJNA610582 | ENA

TYRP1 knock-down in human melanoma cell line (501Mel)

Project description:Efficient TYRP1 knock-down (KD) have been performed in human melanoma cell line expressing a high level of TYRP1 mRNA and protein in order to identify the molecular pathway explaining the decrease of cell proliferation in TYRP1 KD cells.

2017-07-01 | GSE70561 | GEO

Effect of U1 snRNA knock-in on gene expression during HSV-1 infection

Project description:To investigate the effect of U1 snRNA knock-in on gene expression during HSV-1 infection, we obtained BMDMs from WT and U1 snRNA myeloid knock-in (U1mKI) mice, and infected them with HSV-1 (MOI, 1) for 4 hours. Subsequently, we performed gene expression profiling analysis using RNA-seq.

2025-09-09 | GSE269901 | GEO

Global poly(A+) RNA-seq profiling in control and CFIm25 KD human embryonic stem cells (H9 cell line)

Project description:To understand how CFIm25, an mRNA 3' processing regulator, affects the global poly(A+) RNAs profiling in hESCs (H9 cell line). We carried out poly(A+)-seq in control (2 samples) and CFIm25 KD (3 samples) hESCs.Using a cutoff value (P<0.05, fold change>1), in total, 577 differentially expressed genes (268 down-regulated genes and 309 up-regulated genes) were found upon CFIm25 KD, and the number of down-regulated genes and up-regulated genes were 84 and 128 respectively if using the cutoff value (P<0.05, fold change>2).

2022-04-21 | GSE176327 | GEO

CRISPR/Cas9 knock down line

Project description:CRISPR/Cas9 knock down line

| PRJNA521684 | ENA