Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Helicobacter pylori 26695

ABSTRACT: The primary transcriptome of the major human pathogen Helicobacter pylori

PROVIDER: PRJNA79523 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR031126.fastq.gz	Fastqsanger.gz
	SRR031127.fastq.gz	Fastqsanger.gz
	SRR031128.fastq.gz	Fastqsanger.gz
	SRR031129.fastq.gz	Fastqsanger.gz
	SRR031130.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 114

Similar Datasets

Pseudaminic acid enrichment of Helicobacter pylori 26695

Project description:Development of antibodies to Pseudaminic acid to enable glycoproteomic analysis of Helicobacter pylori 26695

2025-10-22 | PXD048493 | Pride

Expression data from AGS cells with Helicobacter pylori infection

Project description:Helicobacter pylori (H. pylori) is a human pathogen that infects almost half of the world’s population. Infection with H. pylori is frequently associated with chronic gastritis and can even lead to gastric and duodenal ulcers and gastric cancer. Although the persistent colonization of H. pylori and the development of H. pylori-associated gastritis remain poorly understood, it is believed that, in gastric mucosa, the modulated gastric epithelial cells (GECs) by H. pylori are key contributors. We used microarrays to detail the global programme of gene expression in Helicobacter pylori infected-gastric epithelial cell line AGS cells and identified up-regulated genes induced by Helicobacter pylori infection.

2024-04-18 | GSE264263 | GEO

Helicobacter pylori 26695

Project description:Helicobacter pylori 26695 Genome sequencing

| PRJNA175543 | ENA

Gene expression profiling of gastric cells infected by Helicobacter pylori

2016-03-01 | GSE70394 | GEO

Helicobacter pylori 26695

Project description:Biological cost of rifampicin resistance in Helicobacter pylori

| PRJNA134859 | ENA

Transcriptome analysis of AGS cells infected with Helicobacter pylori P12

Project description:Transcriptome analysis of AGS cells infected with Helicobacter pylori P12

2018-09-17 | GSE73226 | GEO

Helicobacter pylori 26695

Project description:Epigenetic effects of m4C DNA methylation in Helicobacter pylori

| PRJNA431311 | ENA

Toll-like receptor 10 in Helicobacter pylori infection

Project description:Helicobacter pylori is a highly successful and important human pathogen that causes chronic gastritis, peptic ulcer diseases and gastric cancer. Innate immunity plays an important role of the primary defense against pathogens and epidemiological studies have suggested a role of toll-like receptor 1 (TLR1) in the risk of H. pylori acquisition. We performed microarray analysis of gastric mucosal biopsy specimens from H. pylori-positive and uninfected subjects; infection was associated with an ~15-fold up-regulation of TLR10 (p <0.001). Quantitative RT-PCR confirmed TLR10 mRNA levels were increased 3-fold in H. pylori-infection (p <0.001) and immunohistochemistory using anti-TLR10 polyclonal antibodies showed increased TLR10 expression in gastric epithelial cells of infected individuals. In vitro experiments where H. pylori was co-cultured with NCI-N87 gastric cells showed significant H. pylori-specific up-regulation of TLR10 mRNA levels and a correlation with TLR2 mRNA levels (R = 0.87, P <0.001). We compared combinations of TLRs for their ability to mediate NF-_B activation. NF-_B activation was increased following exposure to heat killed H. pylori or H. pylori-LPS only with the TLR2/TLR10 heterodimer. These findings suggest TLR10 is a functional receptor involved in the innate immune response to H. pylori infection and that TLR2/TLR10 heterodimer possibly functions in the recognition of H. pylori-LPS.

2015-06-01 | GSE60427 | GEO

Helicobacter pylori 26695-1

Project description:Helicobacter pylori 26695-1 Genome sequencing

| PRJNA270700 | ENA

Gene expression profiling of gastric cells infected by Helicobacter pylori

Project description:Helicobacter pylori are gram-negative bacteria that colonize the human stomach and are the major etiological factor in gastric carcinoma development. The aim of this work was to evaluate changes in gene expression in gastric cells induced by H. pylori. The human gastric carcinoma-derived cell line AGS was infected with H. pylori strain 60190 (ATCC 49503) for 24 hours. RNA was extracted from three independent experiments.

2016-03-01 | E-GEOD-70394 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data