Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Fungal metagenome of DNA extracted from Pinus densiflora seedling roots collected from disturbed area and mature forest

PROVIDER: PRJNA796051 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR17541700_1.fastq.gz	Fastqsanger.gz
	SRR17541700_2.fastq.gz	Fastqsanger.gz
	SRR17541701_1.fastq.gz	Fastqsanger.gz
	SRR17541701_2.fastq.gz	Fastqsanger.gz
	SRR17541702_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 158

Similar Datasets

fungus metagenome

Project description:Fungal community in Pinus densiflora logs for seedling regeneration

| PRJDB13698 | ENA

Gene expression profiling of ramie roots during hydroponic induction and adaption to aquatic environment

Project description:Transcriptome analysis of root development related genes in terrestrial and hydroponic ramie. Ramie seedlings were cultivated in soil, and in hydroponic with the shoot-cutting propagation method. The root samples from hydrophonic ramie were collected from the early stage (5-day-old seedling) and the late stage (30-day-old seedling) of acquatic roots induction. The roots of ramie seedling cultivated in soil were also collected for comparative analysis. Our study represents the detailed analysis of ramie root transcriptomes with biologic replicates.

2017-09-15 | GSE98903 | GEO

Pinus densiflora

Project description:Pinus densiflora overview

| PRJNA546424 | ENA

Pinus densiflora var. densiflora

Project description:Pinus densiflora var. densiflora Raw sequence reads

| PRJNA694224 | ENA

Pinus densiflora

Project description:Resequencing of Pinus densiflora

| PRJNA1089248 | ENA

Project description:Fungal ITS2 (internal transcribed spacer 2) region sequences from DNA extracted from roots of Pinus densiflora colonized by Tricholoma matsutake

| PRJNA1266404 | ENA

Pinus densiflora

Project description:Pinus densiflora Raw sequence reads

| PRJNA299244 | ENA

Pinus radiata tissues (root, adult and juvenil needle, bud) proteomics

Project description:Roots and needles were harvested from 6 juvenile Pinus radiata seedlings (3 biological pool constituted by 2 seedlings each). Needles and floral buds were harvested from 6 adult Pinus radiata plants (3 biological pools constituted by 2 plants each).

2025-05-16 | PXD047869 | Pride

Project description:Pinus densiflora PacBio SMRT iso-sequencing analysis

| PRJNA666942 | ENA

Scots pine (Pinus sylvestris) differentially interacts with Cenococcum geophilum and other simultaneously inoculated mycorrhizal (ECM) fungi

Project description:To identify specific gene networks induced in host roots by C. geophilum, we inoculated seedlings of Scots pine simultaneously with C. geophilum and either Suillus granulatus or Rhizopogon roseolus, two common ECM fungi associated to pines. We then measured the differential expression of Scots pine genes in the respective mycorrhizas using oligoarrays. We performed 14 hybridizations (NimbleGen) with samples derived from Pinus sylvestris mycorrhiza with Cenococcum geophilum, Rhizopogon roseolus or Suillus granulatus (3 biological replicates each), as well as from non-mycorrhizal control roots (two replicates). Only the Pinus-derived sequences from the array were considered for this analysis. All samples were labeled with Cy3.

2016-08-01 | E-GEOD-80549 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data