Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Actinidia valvata waterlogging stress SMRT

PROVIDER: PRJNA796628 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR17591909_subreads.fastq.gz	Fastqsanger.gz

Items per page:

1 - 1 of 1

Similar Datasets

Project description:Actinidia valvata waterlogging stress

| PRJNA792211 | ENA

Actinidia valvata

Project description:Actinidia valvata overview

| PRJNA1169982 | ENA

Project description:Actinidia valvata Mitochondrial genome

| PRJNA949352 | ENA

unidentified

Project description:Origin and evolution of a waterlogging-tolerant allohexaploid genome in Actinidia valvata (PRJCA030394)

| PRJDB41040 | ENA

Actinidia

Project description:Actinidia valvata and Actinidia arguta Raw sequence reads

| PRJNA984935 | ENA

Actinidia valvata

Project description:Actinidia valvata Genome sequencing and assembly

| PRJNA1169670 | ENA

Project description:Raw transcriptome data of Actinidia valvata and Actinidia chinensis 'Hongyang'

| PRJNA1420270 | ENA

Development of gene expression signatures for 4 days of waterlogging stress in Arabidopsis thaliana Col-0 plants

Project description:To study the transcriptional changes in waterlogging stress 30 day old Arabidopsis plants were subjected to 4 days of waterlogging stress. We have employed whole genome microarray expression profiling as a discovery platform to identify genes that behave diferentially to the stress. The information could be used to generate transgenic lines that are resistant to waterlogging stress and can be applied to other closely related species to compromise the crop yeild loss. The transgenic lines contain waterlogging-inducible AP2 family of transcription factor.

2016-12-01 | GSE64070 | GEO

Genome-Wide analysis of gene expression responses to waterlogging stress in roots of barley (Hordeum vulgare L.)

Project description:Waterlogging is a major abiotic stress causing oxygen depletion and carbon dioxide accumulation in the rhizosphere. Barley is more susceptible to waterlogging stress than other cereals. To gain a better understanding of the effect of waterlogging stress in barley, we carried out a genome-wide gene expression analysis in roots of Yerong and Deder2 barley genotypes under waterlogging and control (well-watered) conditions by RNA-Sequencing, using Illumina HiSeq™ 4000 platform.

2020-02-14 | GSE144077 | GEO

Rapid systemic responses of Arabidopsis to waterlogging stress are mediated by the ROS wave

Project description:We show that an abrupt waterlogging treatment of Arabidopsis thaliana plants triggers a systemic ROS and calcium wave response, and that the waterlogging-triggered ROS wave response is dependent on RBOHD, calcium-permeable channels GLR3.3 and GLR3.6, and aquaporin PIP2;1 proteins. We further show that waterlogging stress is accompanied by a rapid systemic transcriptomic response that is evident as early as 10 min following waterlogging initiation and is partially dependent on RBOHD. Interestingly, the abrupt waterlogging stress resulted in the triggering of a rapid hydraulic wave response and the transient opening of stomata on leaves. Taken together, our findings reveal that the initiation of waterlogging stress in plants is accompanied by rapid systemic transcriptomic and physiological responses that involve the ROS, calcium, and hydraulic waves. These findings reveal that systemic plant responses to waterlogging stress are rapid and at least partially dependent on cell-to-cell signaling mechanisms.

2024-05-06 | GSE225407 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data