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GCN2 enhances the growth and progression of prostate cancer by maintaining amino acid homeostasis [CHARGE-seq]

ABSTRACT: GCN2 enhances the growth and progression of prostate cancer by maintaining amino acid homeostasis [CHARGE-seq]

PROVIDER: PRJNA804111 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR17913147_1.fastq.gz	Fastqsanger.gz
	SRR17913147_2.fastq.gz	Fastqsanger.gz
	SRR17913148_1.fastq.gz	Fastqsanger.gz
	SRR17913148_2.fastq.gz	Fastqsanger.gz
	SRR17913149_1.fastq.gz	Fastqsanger.gz

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GCN2 enhances the growth and progression of prostate cancer by maintaining amino acid homeostasis [CHARGE-seq]

Project description:Here we report genome wide tRNA charging analysis (CHARGE seq) on DMSO, GCN2iB and GCN2iB plus essential amino acid (EAA) treated WT LNCaP cells

2022-10-17 | GSE196251 | GEO

GCN2 enhances the growth and progression of prostate cancer by maintaining amino acid homeostasis

Project description:GCN2 enhances the growth and progression of prostate cancer by maintaining amino acid homeostasis

| PRJNA804108 | ENA

GCN2 enhances the growth and progression of prostate cancer by maintaining amino acid homeostasis [mRNA-seq]

Project description:GCN2 enhances the growth and progression of prostate cancer by maintaining amino acid homeostasis [mRNA-seq]

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The nutrient-sensing GCN2 signaling pathway is essential for circadian clock function by regulating histone acetylation under amino acid starvation

Project description:Circadian clocks are evolved to adapt to the daily environment changes under different conditions. The ability to maintain circadian clock functions in response to various stress and perturbations is important for organismal fitness. Here, we show that the nutrient sensing GCN2 signaling pathway is required for robust circadian clock function under amino acid starvation in Neurospora. The deletion of GCN2 pathway components disrupts rhythmic transcription of clock gene frq by suppressing WC complex binding at the frq promoter due to its reduced histone H3 acetylation levels. Under amino acid starvation, the activation of GCN2 kinase and its downstream transcription factor CPC-1 establish a proper chromatin state at the frq promoter by recruiting the histone acetyltransferase GCN-5. The arrhythmic phenotype of the GCN2 kinase mutants under amino acid starvation can be rescued by inhibiting histone deacetylation. Finally, genome-wide transcriptional analysis indicates that the GCN2 signaling pathway maintains robust rhythmic expression of metabolic genes under amino acid starvation. Together, these results uncover an essential role of GCN2 signaling pathway in maintaining robust circadian clock function in response to amino acid starvation and the importance of histone acetylation at the frq locus in rhythmic gene expression.

2023-05-08 | GSE220169 | GEO

The role of GCN2 kinase in amino acid dependent longevity and feeding behaviour in Drosophila

Project description:Dietary amino acids restriction extends lifespan in diverse species ranging from flies to mammals. The evolutionarily conserved serine/threonine kinase General Control Nonderepressible 2 (GCN2) is a key sensor of amino acid deficiency and has been implicated in lifespan regulation upon dietary restriction. However, the role of individual essential amino acids (EAA) in modulating organismal lifespan and the underlying molecular mechanisms through which EAA mediate these effects are only partially understood. We generated a novel Drosophila GCN2 null mutant and systematically analyzed its response to individual amino acid deficiency.

2022-06-03 | GSE203210 | GEO

The amino acid sensor GCN2 controls red blood cell life cycle and iron metabolism through regulation of tissue resident macrophages

Project description:GCN2 (General Control Nonderepressible 2) is a serine/threonine-protein kinase that controls mRNA translation in response to amino acid availability. Here we show that production and clearance of erythrocytes are controlled by GCN2. Our data highlight the importance of tissue-resident macrophages as the primary cell type mediating this effect. During different stress conditions, such as hemolysis, amino acid deficiency or hypoxia, GCN2 knockout (GCN2-/-) mice displayed resistance to anemia as compared to wild-type (GCN2+/+) mice. GCN2-/- liver macrophages display defective erythrophagocytosis and lysosome maturation. Molecular analysis of GCN2-/- cells indicates that the ATF4-NRF2 pathway is a critical downstream mediator of GCN2 in regulating RBC clearance and iron recycling. We performed NRF2 (Nfe2l2) ChIP-seq experiments in both WT and GCN2 KO MEFs with or without leucine deprivation.

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GCN2 eIF2 kinase promotes prostate cancer by maintaining amino acid homeostasis.

Project description:A stress adaptation pathway termed the integrated stress response has been suggested to be active in many cancers including prostate cancer (PCa). Here, we demonstrate that the eIF2 kinase GCN2 is required for sustained growth in androgen-sensitive and castration-resistant models of PCa both in vitro and in vivo, and is active in PCa patient samples. Using RNA-seq transcriptome analysis and a CRISPR-based phenotypic screen, GCN2 was shown to regulate expression of over 60 solute-carrier (SLC) genes, including those involved in amino acid transport and loss of GCN2 function reduces amino acid import and levels. Addition of essential amino acids or expression of 4F2 (SLC3A2) partially restored growth following loss of GCN2, suggesting that GCN2 targeting of SLC transporters is required for amino acid homeostasis needed to sustain tumor growth. A small molecule inhibitor of GCN2 showed robust in vivo efficacy in androgen-sensitive and castration-resistant mouse models of PCa, supporting its therapeutic potential for the treatment of PCa.

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GCN2 enhances the growth and progression of prostate cancer by maintaining amino acid homeostasis

Project description:This SuperSeries is composed of the SubSeries listed below.

2022-10-18 | GSE196253 | GEO

Selective control of metabolism by the GCN2 eIF2 kinase pathway in Saccharomyces cerevisiae

Project description:When eukaryotic cells are deprived of amino acids, uncharged tRNAs accumulate and activate the conserved GCN2 protein kinase. We examine how yeast growth and tRNA charging or aminoacylation is affected during amino acid depletion in the presence and absence of GCN2. tRNA charging is measured using a microarray technique which allows for simultaneous measurement of all cytosolic tRNAs. A fully prototrophic and its isogenic GCN2 deletion strain were used. We measured relative tRNA charging levels in yeast strains with an intact and deleted GCN2.

2010-08-01 | E-GEOD-22452 | biostudies-arrayexpress

GCN2 enhances the growth and progression of prostate cancer by maintaining amino acid homeostasis [mRNA-seq]

Project description:Here we report mRNA seq on DMSO and GCN2iB treated WT LNCaP cells

2022-10-17 | GSE196252 | GEO