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Alloteropsis semialata

ABSTRACT: Alloteropsis semialata Phenotype or Genotype

PROVIDER: PRJNA805113 | ENA |

REPOSITORIES: ENA

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Dataset's files

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			Action	DRS
	SRR18909889.fastq.gz	Fastqsanger.gz
	SRR31895907_1.fastq.gz	Fastqsanger.gz
	SRR31895907_2.fastq.gz	Fastqsanger.gz
	SRR31895908_1.fastq.gz	Fastqsanger.gz
	SRR31895908_2.fastq.gz	Fastqsanger.gz

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Alloteropsis semialata

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Alloteropsis semialata as a study system for C4 evolution in grasses.

Project description:BackgroundNumerous groups of plants have adapted to CO2 limitations by independently evolving C4 photosynthesis. This trait relies on concerted changes in anatomy and biochemistry to concentrate CO2 within the leaf and thereby boost productivity in tropical conditions. The ecological and economic importance of C4 photosynthesis has motivated intense research, often relying on comparisons between distantly related C4 and non-C4 plants. The photosynthetic type is fixed in most species, with the notable exception of the grass Alloteropsis semialata. This species includes populations exhibiting the ancestral C3 state in southern Africa, intermediate populations in the Zambezian region and C4 populations spread around the palaeotropics.ScopeWe compile here the knowledge on the distribution and evolutionary history of the Alloteropsis genus as a whole and discuss how this has furthered our understanding of C4 evolution. We then present a chromosome-level reference genome for a C3 individual and compare the genomic architecture with that of a C4 accession of A. semialata.ConclusionsAlloteropsis semialata is one of the best systems in which to investigate the evolution of C4 photosynthesis because the genetic and phenotypic variation provides a fertile ground for comparative and population-level studies. Preliminary comparative genomic investigations show that the C3 and C4 genomes are highly syntenic and have undergone a modest amount of gene duplication and translocation since the different photosynthetic groups diverged. The background knowledge and publicly available genomic resources make A. semialata a great model for further comparative analyses of photosynthetic diversification.

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