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Single-cell RNA sequencing in Kawasaki disease

ABSTRACT: Single-cell RNA sequencing in Kawasaki disease

PROVIDER: PRJNA826467 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR18744625_1.fastq.gz	Fastqsanger.gz
	SRR18744625_2.fastq.gz	Fastqsanger.gz
	SRR18744626_1.fastq.gz	Fastqsanger.gz
	SRR18744626_2.fastq.gz	Fastqsanger.gz
	SRR18744627_1.fastq.gz	Fastqsanger.gz

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Kawasaki Disease and Other Febrile Illnesses

Project description:ABSTRACT Background. Acute Kawasaki disease (KD) is difficult to distinguish from other acute rash/fever illnesses, in part because the etiologic agent(s) and pathophysiology remain poorly characterized. As a result, diagnosis and critical therapies may be delayed. Methods. We used DNA microarrays to identify possible diagnostic features of KD. We compared gene expression patterns in the blood of 23 children with acute KD and 18 age-matched febrile children with three illnesses that resemble KD. Results. Genes associated with platelet and neutrophil activation were expressed at higher levels in KD patients than in patients with acute adenovirus infections or systemic adverse drug reactions but not in patients with scarlet fever; genes associated with B cell activation were also expressed at higher levels in KD patients than in controls. A striking absence of interferon-stimulated gene expression in the KD patients was confirmed in an independent cohort of KD subjects. We successfully predicted the diagnosis in 21 of 23 KD patients and 7 of 8 adenovirus patients using a set of 38 gene transcripts. Conclusions. These findings provide insight into the molecular features that distinguish KD from other febrile illnesses, and support the feasibility of developing novel diagnostic reagents for KD based on the host response. A disease state experiment design type is where the state of some disease such as infection, pathology, syndrome, etc is studied. Disease State: One of Kawasaki Disease (KD) or control (C) of Scarlet fever (C-sf), adenovirus infection (C-ai) or drug reaction (C-dr) disease_state_design

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