Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Identification of transcripts directly bound to U1A (iCLIP data) and the cell transcriptome after U1A knockdown (3´end sequencing) [RNA-seq]

ABSTRACT: Identification of transcripts directly bound to U1A (iCLIP data) and the cell transcriptome after U1A knockdown (3´end sequencing) [RNA-seq]

PROVIDER: PRJNA839717 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR19310382.fastq.gz	Fastqsanger.gz
	SRR19310383.fastq.gz	Fastqsanger.gz
	SRR19310384.fastq.gz	Fastqsanger.gz
	SRR19310385.fastq.gz	Fastqsanger.gz
	SRR19310386.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

Identification of transcripts directly bound to U1A (iCLIP data) and the cell transcriptome after U1A knockdown (3´end sequencing) [iCLIP]

Project description:Identification of transcripts directly bound to U1A (iCLIP data) and the cell transcriptome after U1A knockdown (3´end sequencing) [iCLIP]

| PRJNA839718 | ENA

Identification of transcripts directly bound to U1A (iCLIP data) and the cell transcriptome after U1A knockdown

Project description:Identification of transcripts directly bound to U1A (iCLIP data) and the cell transcriptome after U1A knockdown

| PRJNA839715 | ENA

Identification of transcripts directly bound to U1A (iCLIP data) and the cell transcriptome after U1A knockdown (3´end sequencing) [iCLIP]

Project description:Investigate the role of U1A (SNRPA) in gene expression regulation

2022-05-23 | GSE203381 | GEO

Identification of transcripts directly bound to U1A (iCLIP data) and the cell transcriptome after U1A knockdown (3´end sequencing) [RNA-seq]

Project description:Investigate the role of U1A (SNRPA) in gene expression regulation

2022-05-23 | GSE203382 | GEO

U1A iCLIP-seq (individual-nucleotide resolution UV crosslinking and immunoprecipitation coupled with RNA sequencing) analysis in HeLa cells

Project description:To better understand the mechanism of U1A functions in human cells, we performed U1A iCLIP-seq analysis in HeLa cells. iCLIP-seq is a previously well-established protocol that is believed to detect protein-RNA interaction at individual-nucleotide resolution. Indeed, successful completion of U1A iCLIP-seq has helped us to illuminate more detailed mechanism through which U1 snRNP prevents mRNA PCPA (premature cleavage and polyadenylation)

2020-02-28 | GSE146018 | GEO

iCLIP-Seq analyses of NSP12-bound RNAs

Project description:iCLIP-Seq analyses of NSP12-bound RNAs

| PRJNA757705 | ENA

iCLIP-Seq analyses of YTHDF3-bound RNAs

Project description:iCLIP-Seq analyses of YTHDF3-bound RNAs

| PRJNA559536 | ENA

iCLIP analysis of RNA bound by FUS in human brain

Project description:RNA abundance decreases linearly from the 5′ to 3′ end of long introns to create “saw-tooth” patterns, and these can be used to infer locations of major splicing events. FUS binds across entire pre-mRNAs with limited sequence specificity, permitting examination of these saw-tooth patterns. We used FUS iCLIP from the human brain to identify deviations from the expected linear decrease of reads across long introns that correspond to recursive splicing events. iCLIP protocol was followed to isolate RNA bound to FUS protein and amplify cDNA library as described in the manuscript. Specific barcodes were used for each RT reaction, and are specified in the library construction protocol for each sequencing run. Random barcodes were also incorporated into cDNAs to distinguish between PCR duplication of cDNA products. The final products were obtained by PCR with Illumina paired-end sequencing primers: 5-CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAACCGCTCTTCCGATCT-3; 5-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT-3

2015-05-05 | E-MTAB-3534 | biostudies-arrayexpress

iCLIP-Seq analyses of DDX46-bound RNAs

Project description:DDX46 is identified to be required at the early step of pre-spliceosome assembly,but the potential roles of DDX46 in RNA editing and whether DDX46 could regulate antiviral innate immunity by editing antiviral transcripts in the nucleus remain elusive. iCLIP-Seq analyses of DDX46-bound RNAs from uninfected and VSV-infected RAW264.7 cells

2016-05-13 | E-GEOD-81386 | biostudies-arrayexpress

iCLIP analysis of RNA bound by FUS in human brain

Project description:iCLIP analysis of RNA bound by FUS in human brain

| PRJEB9306 | ENA