Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Pumpkin (Cucurbita moschata) sequencing

PROVIDER: PRJNA844543 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR19978400.fastq.gz	Fastqsanger.gz
	SRR19978401.fastq.gz	Fastqsanger.gz
	SRR19978402.fastq.gz	Fastqsanger.gz
	SRR19978403.fastq.gz	Fastqsanger.gz
	SRR19978404.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 167

Similar Datasets

Project description:Integrative multi-omic analysis of chilling stress to pumpkin (Cucurbita moschata)

| PRJNA1044531 | ENA

Small RNA Solexa sequencing of 4 Plant Species in the Cucurbitaceae family

Project description:Total RNA was isolated from different tissues (leaf, stem and flesh, rind and placenta of the fruits) using TRIzol reagent and small RNA libraries were generated from four cucurbit species: bottle gourd (Lagenaria siceraria (accession Grif 1617 collection from India)), Cucurbita moschata (accession Grif 14244 Early Butternut) Cucurbita pepo (accession NSL98075 Table King), and watermelon (Citrullus lanatus var. lanatus) (PI 438676 Charleston Grey) by pooling equimolar amounts of total RNA from the aforesaid tissues. Construction of small RNA libraries from size fractionated RNA was carried out as described previously. In brief, small RNA fractions of 18–28 nt were isolated from 15% denaturing polyacrylamide gels and sequentially ligated to 5′ and 3′ RNA adapters. Small RNAs ligated with adapters were converted to DNA by RT-PCR following Solexa protocol. The final PCR product was gel purified and sequenced by Genome Analyser II (Illumina).

2012-08-03 | GSE38176 | GEO

Cucurbita moschata

Project description:Cucurbita moschata overview

| PRJNA209737 | ENA

Project description:Cucurbita moschata Transcriptome

| PRJNA1099576 | ENA

Cucurbita maxima

Project description:Pumpkin (Cucurbita maxima) RNA sequencing

| PRJNA797701 | ENA

Cucurbita

Project description:Cucurbita Maxima and Cucurbita Moschata Assembly

| PRJNA385310 | ENA

Small RNA Solexa sequencing of 4 Plant Species in the Cucurbitaceae family

Project description:Total RNA was isolated from different tissues (leaf, stem and flesh, rind and placenta of the fruits) using TRIzol reagent and small RNA libraries were generated from four cucurbit species: bottle gourd (Lagenaria siceraria (accession Grif 1617 collection from India)), Cucurbita moschata (accession Grif 14244 Early Butternut) Cucurbita pepo (accession NSL98075 Table King), and watermelon (Citrullus lanatus var. lanatus) (PI 438676 Charleston Grey) by pooling equimolar amounts of total RNA from the aforesaid tissues. Construction of small RNA libraries from size fractionated RNA was carried out as described previously. In brief, small RNA fractions of 18–28 nt were isolated from 15% denaturing polyacrylamide gels and sequentially ligated to 5? and 3? RNA adapters. Small RNAs ligated with adapters were converted to DNA by RT-PCR following Solexa protocol. The final PCR product was gel purified and sequenced by Genome Analyser II (Illumina). Examination of small RNA transcriptomes in four plants species using Illumina/Solexa GA-II.

2012-08-02 | E-GEOD-38176 | biostudies-arrayexpress

Cucurbita moschata cultivar:inbred line "112-2"

Project description:Transcriptome Profiling of leaf in pumpkin (Cucurbita moschata Duchesne) Infection with powdery mildew

| PRJNA379761 | ENA

Project description:Cucurbita moschata resequencing BSA

| PRJNA865662 | ENA

Project description:Transcriptome of Cucurbita moschata

| PRJNA725346 | ENA