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Next generation sequencing analysis of Colletotrichum camelliae transcriptomes in response to tea plants.

ABSTRACT: Next generation sequencing analysis of Colletotrichum camelliae transcriptomes in response to tea plants.

PROVIDER: PRJNA847193 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR19581005_1.fastq.gz	Fastqsanger.gz
	SRR19581005_2.fastq.gz	Fastqsanger.gz
	SRR19581006_1.fastq.gz	Fastqsanger.gz
	SRR19581006_2.fastq.gz	Fastqsanger.gz
	SRR19581007_1.fastq.gz	Fastqsanger.gz

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Next generation sequencing analysis of tea plant transcriptomes in response to Colletotrichum camelliae infection.

Project description:Next generation sequencing (NGS) was performed to identify genes changed in tea plant upon Colletotrichum camelliae infection. The goal of the work is to find interesting genes involved in tea plant in response to fungi infection. The object is to reveal the molecular mechanism of tea plant defense.

2024-07-18 | GSE208559 | GEO

Next-generation sequencing analysis of tea plant cultivar transcriptomes in response to Colletotrichum camelliae infection

Project description:Next-generation sequencing (NGS) was performed to identify genes changed in tea plant cultivar Zhongcha 108 upon Colletotrichum camelliae infection. The goal of the work is to find interesting genes involved in tea plant in response to fungi infection. The object is to reveal the molecular mechanism of tea plant defense.

2024-01-23 | GSE226846 | GEO

Next generation sequencing analysis of Colletotrichum camelliae transcriptomes in response to tea plants.

Project description:Next generation sequencing was performed to identify genes changed in Colletotrichum camelllae upon infection tea plants. The goal of the work is to find interesting genes involved in fungal virulence. The object is to reveal the molecular mechanism of funal virulence.

2023-01-25 | GSE205689 | GEO

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Next generation sequencing analysis of tea plant transcriptomes in response to Colletotrichum camelliae infection.

Project description:Next generation sequencing analysis of tea plant transcriptomes in response to Colletotrichum camelliae infection.

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Next-generation sequencing analysis of tea plant cultivar transcriptomes in response to Colletotrichum camelliae infection

Project description:Next-generation sequencing analysis of tea plant cultivar transcriptomes in response to Colletotrichum camelliae infection

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Colletotrichum camelliae strain:LT-3-1

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Next-generation sequencing analysis of ginseng transcriptomes in response to Colletotrichum panacicola infection

Project description:Next-generation sequencing (NGS) was performed to identify genes changed in ginseng upon Colletotrichum panacicola infection. The goal of the work is to find interesting genes involved in ginseng in response to fungi induction. The object is to reveal the molecular mechanism of ginseng disease development caused by Colletotrichum panacicola.

2023-08-08 | GSE226837 | GEO

Identification of regulatory networks of microRNAs and their targets in immunity to Colletotrichum gloeosporioides in tea plant (Camellia sinensis L.)

Project description:Anthracnose disease is caused by Colletotrichum gloeosporioides, and is common in leaves of the tea plant Camellia sinensis. MicroRNAs (miRNAs) have been known as key modulators of gene expression in defense responses; however, the role of miRNAs in tea plant during defensive responses to C. gloeosporioides remains unexplored. Six miRNA sequencing data sets and two degradome data sets were generated from C. gloeosporioides-inoculated and control tea leaves. A total of 485 conserved and 761 novel miRNAs were identified. Of those, 239 known and 369 novel miRNAs exhibited significantly differential expression under C. gloeosporioides stress. 1134 and 596 mRNAs were identified as targets of 389 and 299 novel and conserved miRNAs by degradome analysis, respectively. The expression levels of twelve miRNAs and their targets were validated by quantitative real-time PCR. The predicted targets of five interesting miRNAs were further validated through 5'RLM-RACE. Furthermore, Gene Ontology and metabolism pathway analysis revealed that most of the target genes were involved in translation, carbohydrate metabolism and signal transduction pathways. This study enriches the resources of defense-responsive miRNAs and their targets in C. sinensis, and thus, provides novel insights into the miRNA-mediated regulatory mechanisms underlying immunity responses to biotic stress in tea plant.

2019-04-10 | GSE119728 | GEO

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