Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Whole transcriptome analysis of cancer-associated fibroblast

ABSTRACT: Whole transcriptome analysis of cancer-associated fibroblast

PROVIDER: PRJNA847900 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR19614614_1.fastq.gz	Fastqsanger.gz
	SRR19614614_2.fastq.gz	Fastqsanger.gz
	SRR19614615_1.fastq.gz	Fastqsanger.gz
	SRR19614615_2.fastq.gz	Fastqsanger.gz
	SRR19614616_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 36

Similar Datasets

Whole transcriptome analysis of cancer-associated fibroblast

Project description:Whole transcriptome analysis of cancer-associated fibroblast

2023-06-10 | GSE205814 | GEO

Gene Expression Analysis of Cancer-Associated Fibroblast (CAF) compared to Normal Fibroblast (NF)

Project description:Gene Expression Analysis of Cancer-Associated Fibroblast (CAF) compared to Normal Fibroblast (NF)

| PRJNA241179 | ENA

Proteomics of high-grade serous ovarian cancer models reveals cancer associated fibroblast markers associated with outcome.

Project description:Here, we performed proteomics on whole cell lysate of three high-grade serous ovarian cancer patient derived cancer associated fibroblast (CAF) lines, four commercially available high-grade serous ovarian epithelial cancer cell lines (Kuramochi, PEO4, OVCAR8, ES2) and two immortalized normal Fallopian tube secretory epithelial cell lines (FT237, FT194). N-glycoproteomics using hydrazide-based enrichment was performed on 8/9 models. Integration of data from in vitro models with publicly available primary tissue data identified multiple novel CAF proteins that are associated with poor clinical outcomes in HGSC.

2022-11-28 | MSV000090794 | MassIVE

A compositional change in exomiRs during normal fibroblast to cancer-associated fibroblast transition.

Project description:A compositional change in exomiRs during normal fibroblast to cancer-associated fibroblast transition.

| PRJNA553539 | ENA

Cancer-associated fibroblast-derived urea cycle metabolites promote colorectal cancer growth

Project description:Cancer-associated fibroblast-derived urea cycle metabolites promote colorectal cancer growth

| PRJNA1203894 | ENA

Lactate mediated epigenetic reprogramming during cancer associated fibroblast formation

Project description:Lactate mediated epigenetic reprogramming during cancer associated fibroblast formation

| PRJNA557889 | ENA

MIRO2-mediated mitochondrial transfer from cancer cells induces cancer-associated fibroblast differentiation

Project description:MIRO2-mediated mitochondrial transfer from cancer cells induces cancer-associated fibroblast differentiation

| PRJNA1113323 | ENA

Promotion of Cholangiocarcinoma Growth by Diverse Cancer-associated Fibroblast Subpopulations

Project description:Promotion of Cholangiocarcinoma Growth by Diverse Cancer-associated Fibroblast Subpopulations

| PRJNA645343 | ENA

Gene expression analysis of pancreatic cancer associated fibroblasts

Project description:Gene expression analysis of pancreatic cancer associated fibroblasts and control fibroblasts To identify signaling pathways important in tumor-stromal cell interactions, we performed gene expression profiling on pancreatic cancer associated fibroblast cultures and control fibroblast cultures using Affymetrix Exon arrays. We analyzed 3 control fibroblast cultures and 9 pancreatic cancer associated fibroblast cultures using the Affymetrix Human Exon 1.0 ST platform. Gene expression levels were compared using Partek (version 6.3beta).

2010-05-07 | E-GEOD-21440 | biostudies-arrayexpress

Twist1 knockdown in two gastric cancer-associated fibroblast lines

Project description:Primary human gastric cancer-associated fibroblast (CAF) cultures (CAF14 and CAF32) were establised from 2 gastrectomy specimens. Silencing the expression (loss-of-function effect) of Twist1 in CAFs showed candidate target genes regulated by Twist1 and abrogated their tumor-promoting properties. Experiment design: two gastric CAFs (CAF14 adn CAF32, respectively) were establised from two gastric cancer patients and Twist1 knockdown studies were performed using shRNA.

2014-10-28 | E-GEOD-62738 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data