Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Symbionts of the Bostrichidae beetles Prostephanus trunactus

PROVIDER: PRJNA848820 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR19638529_1.fastq.gz	Fastqsanger.gz
	SRR19638530_1.fastq.gz	Fastqsanger.gz
	SRR19638530_2.fastq.gz	Fastqsanger.gz
	SRR19638531_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

Project description:Bacteroidota symbionts in Bostrichidae beetles

| PRJNA836854 | ENA

Project description:Bacteria symbionts of Cassidinae leaf beetles

| PRJNA561424 | ENA

Burkholderia gladioli

Project description:Genomics of Burkholderia symbionts in Lagriinae beetles

| PRJNA484757 | ENA

Project description:Uncovering active bacterial symbionts in pollen-feeding beetles

| PRJNA770838 | ENA

Beneficial rhizobacteria and virus infection modulate the feeding preferences of the virus vector Epilachna varivestis by modifying key metabolic pathways

Project description:There is growing evidence that microbial plant symbionts shape interactions between plants and other organisms by modulating gene expression and metabolism. However, the detailed mechanisms mediating such effects are not well understood, particularly in systems where plants interact simultaneously with multiple symbionts and antagonists. In this study, we employed a multi-factorial design to explore the individual and combined effects of two plant-beneficial rhizobacteria (Delftia acidovorans and Bradyrhizobium japonicum) and a pathogen (Bean pod mottle virus: BPMV) on gene expression and metabolite production by soybean plants, as well as downstream effects on plant interactions with a beetle vector of BPMV Epilachna varivestis. Our results document microbial effects on basic metabolism and defense pathways, resulting in increased levels of primary metabolites and depletion of secondary metabolites. These changes are consistent with the observed feeding preferences of beetles for rhizobia- inoculated and virus-infected plants, potentially increasing the likelihood to disperse the virus to uninfected plants. Together, our results indicate that BPMV infection and rhizobacteria colonization cause dramatic changes in plant metabolites related to nutrition and defense, with significant consequences for an agriculturally important pathosystem.

2024-12-30 | GSE244001 | GEO

Firefly genomes illuminate parallel origins of bioluminescence in beetles

Project description:Fireflies and their fascinating luminous courtships have inspired centuries of scientific study. Today firefly luciferase is widely used in biotechnology, but the evolutionary origin of their bioluminescence remains unclear. To shed light on this long-standing question, we sequenced the genomes of two firefly species that diverged over 100 million-years-ago: the North American Photinus pyralis and Japanese Aquatica lateralis. To compare bioluminescent origins, we also sequenced the genome of a related click-beetle, the Caribbean Ignelater luminosus, with bioluminescent biochemistry near-identical to fireflies, but anatomically unique light organs, suggesting the intriguing but contentious hypothesis of parallel gains of bioluminescence. Our analyses support two independent gains of bioluminescence between fireflies and click-beetles, and provide new insights into the genes, chemical defenses, and symbionts that evolved alongside their luminous lifestyle.

2018-03-22 | GSE107177 | GEO

Firefly genomes illuminate parallel origins of bioluminescence in beetles

Project description:Fireflies and their luminous courtships have inspired centuries of scientific study. Today firefly luciferase is widely used in biotechnology, but the evolutionary origin of bioluminescence within beetles remains unclear. To shed light on this long-standing question, we sequenced the genomes of two firefly species that diverged over 100 million-years-ago: the North American Photinus pyralis and Japanese Aquatica lateralis. To compare bioluminescent origins, we also sequenced the genome of a related click beetle, the Caribbean Ignelater luminosus, with bioluminescent biochemistry near-identical to fireflies, but anatomically unique light organs, suggesting the intriguing hypothesis of parallel gains of bioluminescence. Our analyses support independent gains of bioluminescence in fireflies and click beetles, and provide new insights into the genes, chemical defenses, and symbionts that evolved alongside their luminous lifestyle.

2018-09-14 | MTBLS698 | MetaboLights

Heterologous Microarray Hybridization Between Vesicomyid Symbionts

2008-11-28 | GSE13447 | GEO

Heterologous Microarray Hybridization Between Vesicomyid Symbionts

Project description:The goal of this study was to use heterologous microarray hybridization to determine genomic content shared among different vesicomyid symbionts. These symbionts are closely related and can be thought of as different strains of bacteria, facilitating the use of heterologous microarray hybridization to determine genomic content. Keywords: comparative genomic hybridization Microarrays were built off the Ruthia magnifica genome and two replicate hybridizations to this organism were used as a baseline for comparisons. Genomic DNA from two other vesicomyid symbionts (Calyptogena kilmeri and C. pacifica symbionts) was also hybridized to the array with three biological replicates for each sample.

2010-05-15 | E-GEOD-13447 | biostudies-arrayexpress

Effect of maternal treatment on gene expression differences in Bacillus thuringiensis infected pooled larvae

Project description:This study examines gene expression differences between infected larvae from different maternal infection backgrounds to try to understand the immunological basis of invertebrate immune priming. Female Tribolium castaneum beetles were either jabbed with sterile saline, heat killed Bt, or left naïve. 15 Offspring from the first and second broods were infected with Bt and 24 hours later pooled by treatment and flash frozen Beetles from saline and primed maternal backgrounds are compared to naïve infected

2016-06-01 | GSE44912 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data