Uric acid-inducible genes in bacteria from the human gut microbiome
Ontology highlight
ABSTRACT:
PROVIDER: PRJNA850627 | ENA |
REPOSITORIES: ENA
Dataset's files
| Action | DRS | |||
|---|---|---|---|---|
| SRR19744338.fastq.gz | Fastqsanger.gz | |||
| SRR19744339.fastq.gz | Fastqsanger.gz | |||
| SRR19744340.fastq.gz | Fastqsanger.gz | |||
| SRR19744341.fastq.gz | Fastqsanger.gz | |||
| SRR19744342.fastq.gz | Fastqsanger.gz |
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Project description:In recent years, the increasing incidence of goose gout has caused serious economic losses. In this study, we explored the effects of lactulose on intestinal health and uric acid metabolism in geese, and used RNA-seq analysis to reveal its potential mechanism. 180 one-day-old Yangzhou geese were divided into three groups: control group (CG, basal diet), high protein model group (MG, containing 21 % crude protein diet), lactulose group (LS, containing 21 % crude protein diet + 0.3 % lactulose). Results showed that compared with the CG group and MG group, the LS group had significantly lower serum uric acid levels and intact ileal mucosal structure. Through bioinformatics analysis of transcriptome (GO and KEGG enrichment analysis, GSEA and trend analysis), we found key pathways and genes closely related to intestinal health and uric acid metabolism. These key findings include: zinc ion import across plasma membrane biological process, ABC Transporters pathway, Wnt signaling pathway, as well as ABCG2, a key gene for uric acid transport, and genes closely related to intestinal structural integrity (KLF2, LRP6, TJP1, TJP3, PROM1). The results showed that lactulose could effectively reduce the serum uric acid level of geese by improving intestinal morphology.
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Project description:Uric acid stored in the fat body of cockroaches is a nitrogen reservoir mobilized in times of scarcity. The discovery of urease in Blattabacterium cuenoti, the primary endosymbiont of cockroaches, suggests that the endosymbiont may participate in cockroach nitrogen economy. However, bacterial urease may only be one piece in the entire nitrogen recycling process from insect uric acid. Thus, in addition to the uricolytic pathway to urea, there must be glutamine synthetase assimilating the released ammonia by the urease reaction to enable the stored nitrogen to be metabolically usable. None of the Blattabacterium genomes sequenced to date possess genes encoding for those enzymes. To test the host's contribution to the process, we have sequenced and analysed Blattella germanica transcriptomes from the fat body. We identified transcripts corresponding to all genes necessary for the synthesis of uric acid and its catabolism to urea, as well as for the synthesis of glutamine, asparagine, proline and glycine, i.e. the amino acids required by the endosymbiont. We also explored the changes in gene expression with different dietary protein levels. It appears that the ability to use uric acid as a nitrogen reservoir emerged in cockroaches after its age-old symbiotic association with bacteri
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Project description:Uric acid (UA) is the final product of purine metabolism and plays an important role as a physiological antioxidant. In recent years, several different groups have reported a correlation between decreased UA in Parkinson’s disease (PD) and clinical progression and stage of PD. However, little is known about the molecular mechanisms of decreased UA under oxidative stress. We used our systematic functional annotation pipeline for silkworm genes to identify a novel UA metabolic pathway regulator under oxidative stress in a UA metabolism mutant silkworm Bombyx mori model. Gene expression was measured in 3day of fifth instar larvae of abnormal uric acid synthesis Bombyx mori mutant of op.
2013-07-24 | E-GEOD-37735 | biostudies-arrayexpress
Project description:Uric acid stored in the fat body of cockroaches is a nitrogen reservoir mobilized in times of scarcity. The discovery of urease in Blattabacterium cuenoti, the primary endosymbiont of cockroaches, suggests that the endosymbiont may participate in cockroach nitrogen economy. However, bacterial urease may only be one piece in the entire nitrogen recycling process from insect uric acid. Thus, in addition to the uricolytic pathway to urea, there must be glutamine synthetase assimilating the released ammonia by the urease reaction to enable the stored nitrogen to be metabolically usable.
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2025-02-01 | GSE197089 | GEO
Project description:Uric acid (UA) is the final product of purine metabolism and plays an important role as a physiological antioxidant. In recent years, several different groups have reported a correlation between decreased UA in Parkinson’s disease (PD) and clinical progression and stage of PD. However, little is known about the molecular mechanisms of decreased UA under oxidative stress. We used our systematic functional annotation pipeline for silkworm genes to identify a novel UA metabolic pathway regulator under oxidative stress in a UA metabolism mutant silkworm Bombyx mori model.
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