Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Short-term manure application alters microbiota

PROVIDER: PRJNA851220 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR19759849_1.fastq.gz	Fastqsanger.gz
	SRR19759849_2.fastq.gz	Fastqsanger.gz
	SRR19759850_1.fastq.gz	Fastqsanger.gz
	SRR19759850_2.fastq.gz	Fastqsanger.gz
	SRR19759851_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 72

Similar Datasets

E-GEOD-46538

Project description:Expression data from PDE1C knockdown glioblastoma short-term cultures

2025-01-24 | E-GEOD-46538 | ExpressionAtlas

Project description:Short-term grazing exclusion alters soil bacterial community

| PRJNA787389 | ENA

E-GEOD-60596

Project description:Gene expression profile from short-term caloric restriction in mouse adipose tissue

2016-04-07 | E-GEOD-60596 | ExpressionAtlas

Project description:short-term responses to partial substitution of chemical fertilizer with organic manure

| PRJNA756943 | ENA

E-MTAB-5941

Project description:Transcriptome profiling of short-term response to chilling stress in resistant and susceptible rice seedlings

2019-01-10 | E-MTAB-5941 | ExpressionAtlas

Project description:Nutrient Availability Alters Microbial Carbon Cycling During Short-Term Litter Decomposition

| PRJNA851447 | ENA

Gut microbiota-driven brain Ab amyloidosis requires Microglia

Project description:Recent evidence suggests an important role of the gut microbiome in early life on immune cell entraining. Using two independent transgenic (Tg) lines of Alzheimer’s disease, we have demonstrated that life-long antibiotic (ABX)-perturbation of the gut microbiome is associated with reduced amyloid beta (Ab) plaque pathology and microglial phenotypes in male mice. Furthermore, fecal microbiota transfer (FMT) from age-matched APPPS1-21 Tg mice into long-term ABX-treated male APPPS1-21 mice partially restored amyloidosis and microgliosis, thus establishing causality. in the current studies, we planned to investigate the transcriptome profiles in APPPS1-21 mice treated with short-term abx (PND14-21) compared with vehicle treated groups in genotype-, sex- and time -dependent manner. Most importantly, we also investigated if fecal microbiota transplants from age-matched Tg male mice into short-term abx (PND14-21)-treated male mice restores brain transcriptomes to that of obsreved in vehicle-treated male mice at 9 weeks of age.

2021-10-25 | GSE185407 | GEO

DNaseI hypersensitivity mapping/DNaseI high-throughput sequencing (DHS-Seq) in Saccharomyces cerevisiae

Project description:We report the application of DHS-Seq and digital genomic footprinting to study chromatin changes and transcription factor-DNA binding upon long-term Hsp90 depletion utilizing the temperature-sensitive allele G170D. By generating about 86 and 85.6 million reads for wild type and mutant, we were able to reconstitute the chromatin accessibility and the transcription factor-DNA binding maps under regular conditions and under conditions where Hsp90 was long-term inactivated. We find that there is a global reduction of transcription factor binding sites with concurrent loss of open chromatin upon Hsp90 inactivation. This data was used in conjunction with our previous work involving DHS-Seq studies and short-term Hsp90 depletion (GEO GSE88875) to distinguish the affected transcription factor networks and the chromatin changes upon short- and long-term Hsp90 depletion. We identified two different modes of Hsp90 operation on transcription factor activities – short-term inactivation of Hsp90 altered transcription factor DNA binding activities, whereas long-term Hsp90 inactivation affected the steady-state levels of transcription factors. Overall, this study shows that Hsp90 regulates multiple transcription factor protein families and modulates chromatin architecture on a genome-wide scale.

2019-10-23 | GSE139268 | GEO