Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Oryza nivara

ABSTRACT: Oryza nivara Transcriptome or Gene expression

PROVIDER: PRJNA851542 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR19790748_1.fastq.gz	Fastqsanger.gz
	SRR19790748_2.fastq.gz	Fastqsanger.gz
	SRR19790749_1.fastq.gz	Fastqsanger.gz
	SRR19790749_2.fastq.gz	Fastqsanger.gz
	SRR19790750_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 14

Similar Datasets

Oryza nivara

Project description:Oryza nivara Genome sequencing

| PRJNA319606 | ENA

Oryza nivara

Project description:Oryza nivara Genome sequencing

| PRJNA245488 | ENA

Oryza nivara

Project description:Oryza nivara Genome sequencing

| PRJNA264484 | ENA

Oryza nivara

Project description:Oryza nivara Raw sequence reads

| PRJNA295802 | ENA

Oryza nivara

Project description:Oryza nivara Genome sequencing and assembly

| PRJNA437030 | ENA

Oryza nivara cultivar:IRGC:100897

Project description:OMAP clone end sequence project for Oryza nivara

| PRJNA48107 | ENA

Oryza nivara isolate:WR04-6

Project description:Oryza nivara isolate:WR04-6 Genome sequencing and assembly

| PRJNA439366 | ENA

Oryza

Project description:Oryza nivara, Oryza rufipogen, Oryza longistaminata Raw sequence reads

| PRJNA579440 | ENA

Dynamic Profiles of transcriptome in Oryza sativa leaf

Project description:To evaluate the roles of gene regulation in Oryza sativa leaf, dynamic profiles of transcriptome were investigated in Oryza sativa L. spp. indica with different treatments, the aerial tissues of one-month-old plants from four different areas (groups 1–4) were treated with 0, 40 mL of 25% azoxystrobin, 0.01 g of VdAL, or 40 mL of 25% azoxystrobin plus 0.01 g VdAL, respectively.

2018-12-18 | GSE108204 | GEO

WRKY transcription factor genes in wild rice Oryza nivara.

Project description:The WRKY transcription factor family is one of the largest gene families involved in plant development and stress response. Although many WRKY genes have been studied in cultivated rice (Oryza sativa), the WRKY genes in the wild rice species Oryza nivara, the direct progenitor of O. sativa, have not been studied. O. nivara shows abundant genetic diversity and elite drought and disease resistance features. Herein, a total of 97 O. nivara WRKY (OnWRKY) genes were identified. RNA-sequencing demonstrates that OnWRKY genes were generally expressed at higher levels in the roots of 30-day-old plants. Bioinformatic analyses suggest that most of OnWRKY genes could be induced by salicylic acid, abscisic acid, and drought. Abundant potential MAPK phosphorylation sites in OnWRKYs suggest that activities of most OnWRKYs can be regulated by phosphorylation. Phylogenetic analyses of OnWRKYs support a novel hypothesis that ancient group IIc OnWRKYs were the original ancestors of only some group IIc and group III WRKYs. The analyses also offer strong support that group IIc OnWRKYs containing the HVE sequence in their zinc finger motifs were derived from group Ia WRKYs. This study provides a solid foundation for the study of the evolution and functions of WRKY genes in O. nivara.

| S-EPMC4991837 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data