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ABSTRACT: Rice root microbiome

PROVIDER: PRJNA855582 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR20079761_1.fastq.gz	Fastqsanger.gz
	SRR20079761_2.fastq.gz	Fastqsanger.gz
	SRR20079762_1.fastq.gz	Fastqsanger.gz
	SRR20079762_2.fastq.gz	Fastqsanger.gz
	SRR20079763_1.fastq.gz	Fastqsanger.gz

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Project description:rice root microbiome

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Niche differentiation of arsenic-transforming microbial groups in rice rhizosphere compartments as impacted by water management and soil-As concentrations

Project description:Arsenic (As) bioavailability in the rice rhizosphere is influenced by many microbial interactions, particularly by metal-transforming functional groups at the root-soil interface. This study was conducted to examine As-transforming microbes and As-speciation in the rice rhizosphere compartments, in response to two different water management practices (continuous and intermittently flooded), established on fields with high to low soil-As concentration. Microbial functional gene composition in the rhizosphere and root-plaque compartments were characterized using the GeoChip 4.0 microarray. Arsenic speciation and concentrations were analyzed in the rhizosphere soil, root-plaque, porewater and grain samples. Results indicated that intermittent flooding significantly altered As-speciation in the rhizosphere, and reduced methyl-As and AsIII concentrations in the pore water, root-plaque and rice grain. Ordination and taxonomic analysis of detected gene-probes indicated that root-plaque and rhizosphere assembled significantly different metal-transforming functional groups. Taxonomic non-redundancy was evident, suggesting that As-reduction, -oxidation and -methylation processes were performed by different microbial groups. As-transformation was coupled to different biogeochemical cycling processes establishing functional non-redundancy of rice-rhizosphere microbiome in response to both rhizosphere compartmentalization and experimental treatments. This study confirmed diverse As-biotransformation at root-soil interface and provided novel insights on their responses to water management, which can be applied for mitigating As-bioavailability and accumulation in rice grains.

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Project description:Malnutrition is a major underlying cause of mortality in children and women in low and middle-income countries, like Bangladesh. This is mostly due to the poor dietary diversity and where rice is the main staple food. This preliminary study has explored the potential for increased nutritional and health benefits from soaking rice in the traditional Bangladeshi style of traditional soaked rice Panta Bhat for its nutritional value and microbiome contents for possible nutritional and health benefits.

2025-03-30 | E-MTAB-13807 | biostudies-arrayexpress

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Project description:Diversification of Root Hair Development Genes in Vascular Plants - rice dataset

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Project description:Transcription profiling by high throughput sequencing of rice mature root tissue and root tips at two time points

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Project description:RNA-Seq of various rice tissues (Root hair, Collar, Leaf sheath, Ligule, Anther wall)

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Below ground attack by root knot nematode Meloidogyne graminicola predisposes rice to blast disease

Project description:Magnaporthe oryzae (rice blast) and the root-knot nematode Meloidogyne graminicola are causing two of the most important pathogenic diseases jeopardizing rice production. Here, we show that root-knot nematode infestation on rice roots leads to important above-ground changes in plant immunity gene expression, which is correlated with significantly enhanced susceptibility to blast disease.

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MERISTEM ACTIVITYLESS1 (MAL1) is involved in crown root development through the maintenance of meristem size in rice

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2020-10-09 | GSE141854 | GEO

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