Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Transcriptome of DsSEP2 transgenic Arabidopsis leaves

PROVIDER: PRJNA856076 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR19994746.fastq.gz	Fastqsanger.gz
	SRR19994747.fastq.gz	Fastqsanger.gz
	SRR19994748.fastq.gz	Fastqsanger.gz
	SRR19994749.fastq.gz	Fastqsanger.gz
	SRR19994750.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

zf1 experiment

Project description:rs09-03_zf1 - zf1 experiment - Transcriptome analysis of mutants for novel AGO-hook type proteins in Arabidopsis thaliana - Plants were grown on soil in controlled environment under LD (16 h light/8 h dark) and the rosette leaves (8-leaf stage seedlings) were collected for RNA preparation Keywords: normal vs transgenic comparison

2011-01-01 | GSE21646 | GEO

Transgenic Ah24-OE vs Wild type Col 0 Arabidopsis plants

Project description:Transcriptional profiling of Arabidopsis rossette leaves comparing WT Col-0 with a transgenic line overexpressing Ah24 gene from Amaranthus hypochondriacus.

2015-06-26 | GSE70272 | GEO

Transgenic AhDGR-OE vs Wild type Col 0 Arabidopsis plants

Project description:Transcriptional profiling of Arabidopsis rossette leaves comparing WT Col-0 with a transgenic line overexpressing AhDGR gene from Amaranthus hypochondriacus.

2016-11-30 | GSE84726 | GEO

Transgenic AhNF-YC-OE vs Wild type Col 0 Arabidopsis plants

Project description:Transcriptional profiling of Arabidopsis rossette leaves comparing WT Col-0 with a transgenic lines overexpressing AhNF-YC gene from Amaranthus hypochondriacus in three different conditions.

2015-07-14 | GSE70861 | GEO

Amaranth's transcription factors overexpression, AhERF and AhDOF, increase drought and salt tolerance in Arabidopsis thaliana

Project description:Transcriptional profiling of Arabidopsis rossette leaves comparing WT Col-0 with a transgenic line overexpressing AhERF or AhDOF genes from Amaranthus hypochondriacus under different conditions.

2016-06-30 | GSE77815 | GEO

Mature Arabidopsis leaves: RAP2.6L overexpressing vs wild-type (Ws)

Project description:Transcriptional profiling of Arabidopsis thaliana, comparing control wild-type (ecotype Wassilewskija, Ws) leaves with leaves from transgenic plants overexpressing the transcription factor RAP2.6L under control of the cauliflower mosaic virus 35S promoter (RAP2.6L-OX; this line was originally described in Krishnaswamy et al (2010)).

2017-06-30 | GSE90601 | GEO

ABA is required for plant acclimation to a combination of salt and heat stress

Project description:We examined changes in steady-state transcript level in leaves of Arabidopsis plants subjected to salinity, heat stress and their combination by a transcriptome analysis of leaves.

2016-10-24 | GSE72806 | GEO

Gene expression profiling in senescence leaves from senescence-inducible LEC2 in Arabidopsis

Project description:The profiling was conducted with the 385K Microarray manufactured at NimbleGen, Inc (http://www.nimblegen.com/) designed from 30,386 genes of Arabidopsis (TAIR v.6). RNA samples of leaves of S1 (100% green leaf from 40 days plant) and S3 (more than 50% yellow leaf) senescence stages from senescence-inducible LEC2 transgenic plant, OIL21 were subjected for analysis of Arabidopsis 385K transcriptome. Expression of 3,025 genes were significantly changed with log2 ratios greater than 1.0 or less than -1.0 in S1 or S3 stage (p value <0.05), among which 1491 were up-regulated and 1534 were down regulated. Gene annotation revealed that 7.4% genes, 223 out of 3,025 changed by LEC2 were encoded transcription factors (TF). 106 TFs were up-regulated and 115 TFs were down-regulated. A total of 9 chips were used for microarray. Total RNAs were extracted from senescence leaves at S1 and S3 stages of wild-type and senescence-inducible LEC2 transgenic Arabidopsis. Experiments were triplicated.

2012-12-05 | E-GEOD-38489 | biostudies-arrayexpress

DELLA targets in proliferating leaf tissue

Project description:Transcriptome changes 1h or 4h following DELLA stabilisation in microdissected fully proliferating Arabidopsis leaves

2013-08-01 | GSE49399 | GEO

Global gene expression analysis of NMN-induced disease resistance in Arabidopsis thaliana.

Project description:We performed transcriptome analysis using an Agilent Arabidopsis ver.3 44k Microarray (Palo Alto, CA, USA) to profile effect of NMN treatment in uninoculated leaves and inoculated leaves with F. graminearum.

2017-09-06 | GSE93079 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data