Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Oxalis stricta

ABSTRACT: Whole genome sequencing and transcriptome sequencing of Oxalis stricta, Woodsorrel

PROVIDER: PRJNA856298 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR20016400_1.fastq.gz	Fastqsanger.gz
	SRR20016400_2.fastq.gz	Fastqsanger.gz
	SRR20016401_1.fastq.gz	Fastqsanger.gz
	SRR20016401_2.fastq.gz	Fastqsanger.gz
	SRR20016403_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 74

Similar Datasets

Oxalis stricta

Project description:Oxalis stricta overview

| PRJNA862245 | ENA

Oxalis stricta

Project description:Complete genome of Oxalis stricta chloroplast

| PRJNA862181 | ENA

Oxalis tuberosa

Project description:Whole genome sequencing and transcriptome sequencing of Oxalis tuberosa, Oca

| PRJNA1005998 | ENA

Expression analysis of uninfected Boechera stricta and infected Boechera stricta with Puccinia monoica forming pseudoflowers using an Arabidopsis thaliana gene expression 4x72K array design from NimbleGen.

2013-09-01 | GSE41165 | GEO

Oxalis acetosella

Project description:Oxalis acetosella Genome sequencing and assembly

| PRJNA1205409 | ENA

Oxalis corniculata

Project description:Oxalis corniculata Genome sequencing and assembly

| PRJNA659844 | ENA

Oxalis corniculata

Project description:Oxalis corniculata overview

| PRJNA684399 | ENA

Oxalis articulata

Project description:Oxalis articulata overview

| PRJNA1242960 | ENA

Oxalis corymbosa

Project description:Oxalis corymbosa overview

| PRJNA1224898 | ENA

Project description:The expression of 30362 plant genes from uninfected flowers of Boechera stricta, uninfected steam and leaves of B. stricta and infected B. stricta with Puccinia monoica forming pseudoflowers. We hybridized cDNA from each sample to an Arabidopsis thaliana gene expression 4x72K format NimbleGen array (ATH6_60mer_expr). We used a eukaryotic gene expression array design No.5048 from NimbleGen (Cat No. A4511001-00-01). Each 5048 array measures the expression level of 30,362 target genes from Arabidopsis thaliana in a 4-plex format 4x72K with with 72,000 probes per array, a total of two probes per target gene, and 60-mer probe length. Total RNA samples recovered from infected leaves of Boechera stricta with Puccinia monoica (pseudoflowers) and uninfected stem and leaves of B. stricta. Experiments included three/two biological repllicates from each sample. We carried out total RNA extractions for all samples using RNAesy Plant Mini Kit (Qiagen, Cat No. 74904). cDNA synthesis was performed by NimbleGen.

2013-09-01 | E-GEOD-41165 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data