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Lactuca sativa cultivar:Cheongchima, Arabidopsis thaliana (Col-0)

ABSTRACT: Targeted A-to-G base editing of cellular organelle DNA in plants

PROVIDER: PRJNA858174 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR20115301_1.fastq.gz	Fastqsanger.gz
	SRR20115301_2.fastq.gz	Fastqsanger.gz
	SRR20115302_1.fastq.gz	Fastqsanger.gz
	SRR20115302_2.fastq.gz	Fastqsanger.gz
	SRR20115303_1.fastq.gz	Fastqsanger.gz

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Lactuca sativa cultivar:Cheongchima, Arabidopsis thaliana (Col-0)

Project description:Targeted A-to-G base editing of cellular organelle DNA in plants

| PRJNA1067803 | ENA

Name:Lactuca sativa cultivar:Cheongchima, Arabidopsis thaliana (Col-0)

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Arabidopsis thaliana strain:Col 0 Transcriptome or Gene expression

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Project description:Genome wide quantitative trait loci (QTL) mapping was conducted in Arabidopsis thaliana using F2 mapping population (Col-0 × Don-0) and SNPs markers. A total of five linkage groups were obtained with number of SNPs varying from 45 to 59 per linkage group. The composite interval mapping detected a total of 36 QTLs for 15 traits and the number of QTLs ranged from one (root length, root dry biomass, cauline leaf width, number of internodes and internode distance) to seven (for bolting days). The range of phenotypic variance explained (PVE) and logarithm of the odds ratio of these 36 QTLs was found be 0.19-38.17% and 3.0-6.26 respectively. Further, the epistatic interaction detected one main effect QTL and four epistatic QTLs. Five major QTLs viz. Qbd.nbri.4.3, Qfd.nbri.4.2, Qrdm.nbri.5.1, Qncl.nbri.2.2, Qtd.nbri.4.1 with PVE > 15.0% might be useful for fine mapping to identify genes associated with respective traits, and also for development of specialized population through marker assisted selection. The identification of additive and dominant effect QTLs and desirable alleles of each of above mentioned traits would also be important for future research.

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