Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Genome sequencing of Campylobacter upsaliensis isolates

PROVIDER: PRJNA860177 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR20314357.fastq.gz	Fastqsanger.gz
	SRR20314358.fastq.gz	Fastqsanger.gz
	SRR20314359.fastq.gz	Fastqsanger.gz
	SRR20314360.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 22

Similar Datasets

Campylobacter upsaliensis RM3940

Project description:Campylobacter upsaliensis RM3940 Genome sequencing project

| PRJNA66789 | ENA

Campylobacter upsaliensis RM3195

Project description:Campylobacter upsaliensis RM3195 genome sequencing project

| PRJNA41383 | ENA

Campylobacter upsaliensis DSM 5365

Project description:Campylobacter upsaliensis DSM 5365 Genome sequencing and assembly

| PRJNA220998 | ENA

Campylobacter upsaliensis strain:FD302

Project description:Campylobacter upsaliensis strain:FD302 Genome sequencing and assembly

| PRJNA894791 | ENA

Array-based comparative genomics of Campylobacter jejuni sheep abortion isolates (Part 2)

Project description:Campylobacter jejuni has become the predominant cause of sheep abortions in the U.S. However, little is know about the genetic diversity among the isolates collected from different time periods. In this study, the genetic diversity of sheep aborion isolates of C. jejuni was investigated by Array-based CGH

2014-02-11 | GSE54859 | GEO

Array-based comparative genomics of Campylobacter jejuni sheep abortion isolates (Part 1)

Project description:Campylobacter jejuni has become the predominant cause of sheep abortions in the U.S. However, little is know about the genetic diversity among the isolates collected from different time periods. In this study, the genetic diversity of sheep abortion isolates of C. jejuni was investigated by Array-based CGH

2014-02-11 | GSE54858 | GEO

Campylobacter upsaliensis strain:XJK42-1 | isolate:XJK42-1

Project description:Campylobacter upsaliensis strain:XJK42-1 | isolate:XJK42-1 Genome sequencing

| PRJNA1003230 | ENA

EURL-Campylobacter - Campylobacter upsaliensis WGS

Project description:Complete assemblies for Campylobacter upsaliensis CCUG 14913 and Campylobcater upsaliensis 17-M197059

| PRJEB47575 | ENA

Comparison of Campylobacter jejuni isolates implicated in Guillain-Barre syndrome and strains that cause enteritis

Project description:We asked whether Campylobacter jejuni isolated from patients with Guillain-Barri syndrome (GBS) differ from isolates isolated from patients with uncomplicated gastrointestinal infection using DNA microarray analysis. We found that specific GBS genes or regions were not identified, and microarray analysis confirmed significant genomic heterogeneity among the isolates. An all pairs experiment design type is where all labeled extracts are compared to every other labeled extract. Keywords: all_pairs

2006-01-04 | GSE3967 | GEO

Genomic variations define divergence of water/wildlife-associated Campylobacter jejuni niche specialists from common clonal complexes

Project description:Although the major food-borne pathogen Campylobacter jejuni has been isolated from diverse animal, human and environmental sources, our knowledge of genomic diversity in C. jejuni is based exclusively on human or human food-chain-associated isolates. Studies employing multilocus sequence typing have indicated that some clonal complexes are more commonly associated with particular sources. Using comparative genomic hybridization on a collection of 80 isolates representing diverse sources and clonal complexes, we identified a separate clade comprising a group of water/wildlife isolates of C. jejuni with multilocus sequence types uncharacteristic of human food-chain-associated isolates. By genome sequencing one representative of this diverse group (C. jejuni 1336), and a representative of the bank-vole niche specialist ST-3704 (C. jejuni 414), we identified deletions of genomic regions normally carried by human food-chain-associated C. jejuni. Several of the deleted regions included genes implicated in chicken colonization or in virulence. Novel genomic insertions contributing to the accessory genomes of strains 1336 and 414 were identified. Comparative analysis using PCR assays indicated that novel regions were common but not ubiquitous among the water/wildlife group of isolates, indicating further genomic diversity among this group, whereas all ST-3704 isolates carried the same novel accessory regions. While strain 1336 was able to colonize chicks, strain 414 was not, suggesting that regions specifically absent from the genome of strain 414 may play an important role in this common route of Campylobacter infection of humans. We suggest that the genomic divergence observed constitutes evidence of adaptation leading to niche specialization. Data is also available from <ahref=http://bugs.sgul.ac.uk/E-BUGS-95 target=_blank>BuG@Sbase</a>

2011-04-15 | E-BUGS-95 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data