Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Anoplopoma fimbria breed:Golden Eagle Sablefish

ABSTRACT: Anoplopoma fimbria breed:Golden Eagle Sablefish Genome sequencing and assembly

PROVIDER: PRJNA869752 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR21199003_1.fastq.gz	Fastqsanger.gz
	SRR21199004_1.fastq.gz	Fastqsanger.gz
	SRR21199005_1.fastq.gz	Fastqsanger.gz
	SRR21199006_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 372

Similar Datasets

Anoplopoma fimbria

Project description:Anoplopoma fimbria overview

| PRJNA83835 | ENA

Anoplopoma fimbria

Project description:Anoplopoma fimbria Genome sequencing

| PRJNA202249 | ENA

Anoplopoma fimbria

Project description:Anoplopoma fimbria Raw sequence reads

| PRJNA279314 | ENA

Anoplopoma fimbria

Project description:Anoplopoma fimbria Transcriptome or Gene expression

| PRJNA71237 | ENA

Anoplopoma fimbria

Project description:Anoplopoma fimbria Genome sequencing and assembly

| PRJNA656728 | ENA

Anoplopoma fimbria

Project description:Sablefish gonadal transcriptome sequencing

| PRJNA416142 | ENA

Project description:Whole genome sequences of sablefish (Anoplopoma fimbria)

| PRJNA1300457 | ENA

Fallopian tube vs Fimbria

Project description:Compare luteal and follicular phases of fimbria and ampulla tissue Fallopian tube epithelial cells for gene expression analysis of fimbria and ampulla specimens were obtained using LCM

2020-04-04 | GSE129348 | GEO

Sablefish (Anoplopoma fimbria) chromosome-level genome assembly.

Project description:Sablefish (Anoplopoma fimbria) are in the suborder Cottioidei, which also includes stickleback and lumpfish. This species inhabits coastal regions of the northeastern and northwestern Pacific Ocean from California to Japan. A commercial fishery for sablefish began to flourish in the 1960s, though a downward trend in stock biomass and landings has been observed since 2010. Aquaculture protocols have been developed for sablefish; eggs and sperm from wild-caught and hatchery-reared captive broodstock are used to generate offspring that reach market size in about two years. Parentage analyses show that survival in aquaculture varies among families. Growth rate and disease resistance also vary among individuals and cohorts, but the extent to which genetics and the environment contribute to this variation is unclear. The sablefish genome assembly reported here will form the foundation for SNP-based surveys designed to detect genetic markers associated with survival, growth rate, and pathogen resistance. Beyond its contribution to sablefish domestication, the sablefish genome can be a resource for the management of the wild sablefish fishery. The assembly generated in this study had a length of 653 Mbp, a scaffold N50 of 26.74 Mbp, a contig N50 of 2.57 Mbp, and contained more than 98% of the 3640 Actinopterygii core genes. We placed 620.9 Mbp (95% of the total) onto 24 chromosomes using a genetic map derived from six full-sib families and Hi-C contact data.

| S-EPMC10320756 | biostudies-literature

caArray_landi-00077: EAGLE Project

Project description:The EAGLE (Environmental and Genetic Lung Cancer Etiology) gene expression study is case-control study of lung cancer conducted in Milan, Italy, designed to identify molecular alteration, particularly gene expression variation induced by smoking in lung carcinoma in this data set. The study is initiated by the Division of Cancer Epidemiology and Genetics (DCEG).

2015-11-24 | GSE75324 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data