Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

16S and ITS amplicon sequences

ABSTRACT: Tasmanian soil bacterial and fungal sequences

PROVIDER: PRJNA884366 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR21713700_1.fastq.gz	Fastqsanger.gz
	SRR21713700_2.fastq.gz	Fastqsanger.gz
	SRR21713701_1.fastq.gz	Fastqsanger.gz
	SRR21713701_2.fastq.gz	Fastqsanger.gz
	SRR21713702_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 192

Similar Datasets

Soil 16S and ITS amplicon sequences

Project description:Soil 16S and ITS amplicon sequences Raw sequence reads

| PRJNA746808 | ENA

Soil 16S amplicon sequences

Project description:Soil microbiome dynamics after fertilization with organic versus mineral fertilization

| PRJNA688413 | ENA

Marine Bacterial 16S Amplicon Sequences

Project description:Arctic Ocean Bacterial 16S rRNA

| PRJNA421665 | ENA

16S rRNA amplicon sequences of bacterial communities

Project description:16S rRNA amplicon sequences from a 5th order mountain stream network, Oregon, USA

| PRJNA534507 | ENA

Bacterial sequences

Project description:Bacterial sequences

| PRJEB35644 | ENA

ITS Amplicon sequences of Dicontrol Soil Samples

Project description:ITS Amplicon sequences of Dicontrol Soil Samples

| PRJEB74508 | ENA

Black soil bacterial sequences

Project description:Black soil bacterial sequences Raw sequence reads

| PRJNA769013 | ENA

16S rRNA amplicon sequences from soil samples collected at Beaver Creek, Washington

Project description:16S rRNA amplicon sequences from soil samples collected at Beaver Creek, Washington

| PRJNA541992 | ENA

High-throughput 16S rRNA amplicon pyrosequencing of contaminated aquifer sediment

Project description:Contaminated aquifer (Dusseldorf-Flinger, Germany) templates extracted from 5 sediment depths ranging between 6.4 and 8.4 m below ground and over 3 years of sampling were amplified for amplicon pyrosequencing using the primers Ba27f (5’-aga gtt tga tcm tgg ctc ag-3’) and Ba519r (5’- tat tac cgc ggc kgc tg-3’), extended as amplicon fusion primers with respective primer A or B adapters, key sequence and multiplex identifiers (MID) as recommended by 454/Roche. Amplicons were purified and pooled as specified by the manufacturer. Emulsion PCR (emPCR), purification of DNA-enriched beads and sequencing run were performed following protocols and using a 2nd generation pyrosequencer (454 GS FLX Titanium, Roche) as recommended by the developer. Quality filtering of the pyrosequencing reads was performed using the automatic amplicon pipeline of the GS Run Processor (Roche), with a slight modification concerning the valley filter (vfScanAllFlows false instead of TiOnly) to extract the sequences. Demultiplexed raw reads were furhter trimmed for quality and lenght (>250 bp).

2012-11-11 | GSE25345 | GEO

MSM65_greenHAB_II Raw Amplicon Sequences

Project description:MSM65_greenHAB_II Raw Amplicon Sequences Raw sequence reads

| PRJNA1046074 | ENA