Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: A reference-based taxonomy reinforces the evolutionary relationships of previously problematic earless lizards (Phyrnosomatidae: Holbrookia)

PROVIDER: PRJNA894589 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR22058000.fastq.gz	Fastqsanger.gz
	SRR22058001.fastq.gz	Fastqsanger.gz
	SRR22058002.fastq.gz	Fastqsanger.gz
	SRR22058003.fastq.gz	Fastqsanger.gz
	SRR22058004.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 66

Similar Datasets

Project description:Evolutionary Relationships of Ticks

| PRJNA936481 | ENA

Project description:Evolutionary study of whiptail lizards (Aspidoscelis)

| PRJNA707030 | ENA

Phylointeractomics reconstructs functional evolution of protein binding

Project description:Molecular phylogenomics investigates evolutionary relationships based on genomic data. However, despite genomic sequence conservation, changes in protein interactions can occur relatively rapidly and may cause strong functional diversification. To investigate such functional evolution, we here combine phylogenomics with interaction proteomics. We develop this concept by investigating the molecular evolution of the shelterin complex, which protects telomeres, across 16 vertebrate species from zebrafish to humans covering 450 million years of evolution. Our phylointeractomics screen discovers previously unknown telomere-associated proteins and reveals how homologous proteins undergo functional evolution. For instance, we show that TERF1 evolved as a telomere-binding protein in the common stem lineage of marsupial and placental mammals. Phylointeractomics is a versatile and scalable approach to investigate evolutionary changes in protein function and thus can provide experimental evidence for phylogenomic relationships.

2017-02-15 | PXD005517 | Pride

A relative shift in cloacal location repositions external genitalia in amniote evolution

2014-08-14 | GSE60373 | GEO

“phyloquant” to study the evolutionary relationships of organisms based on large scale quantitative protein expression

Project description:“phyloquant” to study the evolutionary relationships of organisms based on large scale quantitative protein expression

2021-09-09 | PXD017228 | Pride

Turdus thrushes

Project description:Evolutionary relationships of Sulawesi Thrush

| PRJNA747882 | ENA

A relative shift in cloacal location repositions external genitalia in amniote evolution

Project description:Comparative RNA-seq profiling of mouse and anole lizard developing limbs and external genitalia, to assess evolutionary and develomental relationships, between the two tissue types based on transcriptomic data RNA-seq profiling of embryonic limb and external genitalia tissue at different stages of development, in mouse and anole lizard, in duplicates, using Illumina HiSeq

2014-08-14 | E-GEOD-60373 | biostudies-arrayexpress

Ophrys

Project description:RADseq clarifies evolutionary relationships within Ophrys

| PRJNA400088 | ENA

Transcriptomic analysis of a caffeine-resistant Saccharomyces cerevisiae strain obtained by evolutionary engineering

Project description:A caffeine-resistant Saccharomyces cerevisiae mutant strain was obtained using an evolutionary engineering strategy based on successive batch cultivation at gradually increasing caffeine levels. The mutant strain Caf905-2 was selected at a caffeine concentration where its reference strain could not grow at all. Whole-genome transcriptomic analysis of Caf905-2 was performed with respect to its reference strain.

2018-12-28 | GSE124452 | GEO

The WEIZMASS spectral library for high-confidence metabolite identification

Project description:Annotation of metabolites is an essential, yet problematic, aspect of mass spectrometry (MS)-based metabolomics assays. The current repertoire of definitive annotations of metabolite spectra in public MS databases is limited and suffers from lack of chemical and taxonomic diversity. Furthermore, the heterogeneity of the data prevents the development of universally applicable metabolite annotation tools. Here we present a combined experimental and computational platform to advance this key issue in metabolomics. WEIZMASS is a unique reference metabolite spectral library developed from high-resolution MS data acquired from a structurally diverse set of 3,540 plant metabolites. We also present MatchWeiz, a multi-module strategy using a probabilistic approach to match library and experimental data. This strategy allows efficient and high-confidence identification of dozens of metabolites in model and exotic plants, including metabolites not previously reported in plants or found in few plant species to date.

2018-03-05 | MTBLS330 | MetaboLights

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data