Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: RNA-seq of Phalaenopsis equestris leaves were treated with rays

PROVIDER: PRJNA899319 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR22225471_1.fastq.gz	Fastqsanger.gz
	SRR22225471_2.fastq.gz	Fastqsanger.gz
	SRR22225472_1.fastq.gz	Fastqsanger.gz
	SRR22225472_2.fastq.gz	Fastqsanger.gz
	SRR22225473_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

De novo transcriptome assembly databases in the butterfly orchid Phalaenopsis equestris

Project description:Orchidaceae are renowned for their spectacular flowers as well as other reproductive and ecological adaptations. After the genome of the tropical epiphytic orchid Phalaenopsis equestris was sequenced, we combined Trinity data for de novo assembly and Illumina HiSeq1500 data for RNA-Seq analysis to characterize the transcriptomes of four different organs for a better understanding of the molecular mechanisms driving these characteristics. We present four de novo assembled transcripts reconstructed from RNA collected from the root, stem, leaf, and flower of Phalaenopsis equestris. These sets of transcripts greatly enrich the available data for Phalaenopsis equestris. Here, we present two databases, and each dataset allows for a different type of search for candidate homologues. The first dataset consists of the sets of assembled unigenes, which enable a sequence-based search. A comprehensive analysis of the assembled unigenes revealed the unigenes from root, stem, leaf, and flower with high e-values aligned versus the Nr, Swiss-Port, KEGG, COG, and GO database, respectively. This analysis enabled the production of a second database, which includes sequences correlated with annotated transcript names as well as the confidence of the best hit from BLAST.

2018-06-30 | GSE70411 | GEO

Project description:Small RNA library of Phalaenopsis equestris

| PRJNA888409 | ENA

Sequencing-based approaches reveal low ambient temperature-responsive and tissue-specific microRNAs in Phalaenopsis orchid

Project description:We performed four small RNA sequencing for identification and characterization of microRNAs in Phalaenopsis aphrodite subsp. formosana. By comparing the low temperature-treated group with treated group, we concluded four miRNAs - miR156, miR162, miR528 and miR535 - as low temperature-induced miRNAs. In addition, tissue-specific expression of these miRNAs was investigated. The files contain the miRNAs analysis results in each group. Examination of low temperature-treated leaves and two other organs of Phalaenopsis orchid

2011-12-12 | E-GEOD-27585 | biostudies-arrayexpress

Phalaenopsis equestris

Project description:Phalaenopsis equestris Organism overview

| PRJNA53953 | ENA

Phalaenopsis equestris

Project description:Phalaenopsis equestris Raw sequence reads

| PRJNA888243 | ENA

Phalaenopsis equestris cultivar:blue

Project description:Transcriptome atlas of Phalaenopsis equestris

| PRJNA667255 | ENA

Phalaenopsis equestris isolate:PEQU160606

Project description:Phalaenopsis equestris isolate:PEQU160606 Genome sequencing