Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Transcriptional sequencing of two sugarcane genotypes under temporal response of Sugarcane mosaic virus (SCMV) infection

PROVIDER: PRJNA910309 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR22730647_1.fastq.gz	Fastqsanger.gz
	SRR22730647_2.fastq.gz	Fastqsanger.gz
	SRR22730648_1.fastq.gz	Fastqsanger.gz
	SRR22730648_2.fastq.gz	Fastqsanger.gz
	SRR22730649_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 60

Similar Datasets

Transcription profiling of sugarcane mosaic virus (SCMV) resistance in maize

Project description:The molecular mechanisms underlying the development and progression of sugarcane mosaic virus (SCMV) infection in maize are poorly understood. A transcript profiling study based on maize unigene-microarrays was conducted to identify genes associated with SCMV resistance in the near isogenic line (NIL) pair F7+ (SCMV resistant) and F7 (susceptible). Four comparisons were conducted, which is addressing constitutive genetic discrepancy (Non-infected F7 vs. Non-infected F7+), inducible genetic discrepancy (Infected F7 vs. Infected F7+), compatible reaction (Non-infected F7 vs. Infected F7), and incompatible reaction (Non-infected F7+ vs. Infected F7+).

2005-01-21 | E-MEXP-253 | biostudies-arrayexpress

Unraveling the Impact of Cassava Mosaic Virus Infection: Insights from Proteomics Analysis of Photosynthesis- and Respiration-Related Proteins

Project description:Sri Lankan cassava mosaic virus (SLCMV) poses a serious threat to global food security by affecting cassava production in Southeast Asia. The virus causes mosaic patterns in leaves, disrupting photosynthesis and respiration and altering carbohydrate accumulation in tubers. This study aimed to identify proteins associated with cassava mosaic disease (CMD) symptoms in three cassava genotypes: resistant (TMEB419), tolerant (Kasetsart 50), and susceptible (Rayong 11) to CMD.

2025-05-01 | PXD051925 | JPOST Repository

Leaf transcriptome profiling of contrasting sugarcane genotypes for drought tolerance under field conditions

Project description:Transcriptional profiling of sugarcane leaf (+1) was collected from drought-prone areas at 42 and 117 days after the last rainfall when plants were 6- and 9-month-old, respectively. Sample hybridization (non-irrigated treatment against irrigated control) was performed to monitor gene expression in a two-color Agilent custom microarray. Our goal was to investigate the effect of mild and severe water stress on the transcriptomes of drought-sensitive (IACSP97-7065) and -tolerant (IACSP94-2094) sugarcane genotypes.

2021-11-05 | GSE187416 | GEO

Sugarcane mosaic virus

Project description:Sugarcane mosaic virus Raw sequence reads

| PRJNA545885 | ENA

Project description:Genetic diversity of sugarcane mosaic virus

| PRJNA781125 | ENA

Sugarcane streak mosaic virus cultivar:Sugarcane

Project description:Sugarcane streak mosaic virus cultivar:Sugarcane Genome sequencing and assembly

| PRJNA1035926 | ENA

Expression data from control and infected susceptible and resistant wheat plants

Project description:Comparative analysis of transcriptome in two wheat genotypes with contrasting levels of virus resistance. We used microarrays to investigate the global gene expression in response to virus infection.

2021-09-12 | GSE179675 | GEO

Transcription profiling of Arabidopsis Potyvirus turnip mosaic virus infection stages

Project description:A model system of Potyvirus turnip mosaic virus and Arabidopsis was used in this experiment. GFP-tagged virus supplied a visualized marker for us to localize the viral infection foci and its expansion on leaf under UV light. Initially, we dissect an individual infection focus and its adjacent region into four parts and define those four parts as zone 0, 1, 2, and 3, which represented different viral infection stages respectively. Corresponding fours parts were also dissected from control plant treated with turnip leaf sap only. This process was replicated three times totally.

2006-12-01 | E-MEXP-509 | biostudies-arrayexpress

Project description:Small RNA and degradome deep sequencing reveal regulatory roles of miRNAs in response to Sugarcane mosaic virus infection on two contrasting sugarcane lines

| PRJNA1095722 | ENA

Oryza sativa

Project description:Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection

| PRJNA107123 | ENA