Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Ascidia mentula

ABSTRACT: Ascidia mentula overview

PROVIDER: PRJNA910640 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	ERR10297860_1.fastq.gz	Fastqsanger.gz
	ERR10297860_2.fastq.gz	Fastqsanger.gz
	ERR10287580.fastq.gz	Fastqsanger.gz
	ERR10378036_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

Ascidia sydneiensis

Project description:Ascidia sydneiensis overview

| PRJNA1390939 | ENA

kaAscMent

Project description:Ascidia mentula ((a solitary sea squirt))

| PRJEB56132 | ENA

kaAscMent1

Project description:Ascidia mentula ((a solitary sea squirt)) genome assembly, kaAscMent1

| PRJEB58134 | ENA

The solitary ascidian Ascidia virginea dispersing to warmer waters

Project description:Ascidia virginea from the Israeli coasts

| PRJEB59112 | ENA

kaAscMent

Project description:Ascidia mentula ((a solitary sea squirt)), genomic and transcriptomic data

| PRJEB56131 | ENA

kaAscMent1 alternate haplotype

Project description:Ascidia mentula ((a solitary sea squirt)) genome assembly, kaAscMent1, alternate haplotype

| PRJEB58135 | ENA

XAS spectroscopy, sulfur, and the brew within blood cells from Ascidia ceratodes.

Project description:We report the first use of K-edge X-ray absorption spectroscopy (XAS) as a direct spectroscopic probe of pH and cytosolic emf within living cells. A new accuracy metric of model-based fits to K-edge spectra is further developed. Sulfur functional groups in three collections of living blood cells and one sample of cleared blood plasma from the tunicate Ascidia ceratodes were speciated using K-edge XAS. Cysteine and cystine, the preferred thiol-disulfide model, averaged about 12% of total sulfur. Sulfate monoesters and cyclic diesters unexpectedly constituted 36% of blood cell sulfur. Soluble sulfate averaged about 25% across the three blood cell samples, while the ratio of SO4(2-) to HSO4(-) implied average signet ring vacuolar pH values of 0.85, 1.4, or 3.1. Intracellular (VSO4)(+) was unobserved, while [V(RSO3)n]((3-n)+) was detected in the two lowest pH blood cell samples. About 5% of sulfur was distributed as mono- or dibenzothiophene or ethylene-epi-sulfide, or as a thiadiazole reminiscent of the polycarpathiamines. Blood plasma was dominated by sulfate (83%), but with 15% of an alkylsulfate ester and about 2% of low-valent sulfur. Gravimetric analysis of soluble sulfate yielded average concentrations of blood cell sulfur. Average [cysteine] and [cystine] (ranging ~10-30 mM and ~20-90 mM, respectively) implied blood-cell cytosolic emf values of approximately -0.20 V. High cellular [cysteine] is consistent with the proposed model for enzymatic reduction of vanadate by endogenous thiol, wherein the trajectory of metal site-symmetry is controlled and directed through to a thermodynamically favored 7-coordinate V(III) product.

| S-EPMC3913562 | biostudies-literature

Ascidia sydneiensis samea

Project description:Transcriptome analysis on juveniles of a vanadium-rich ascidian

| PRJDB39971 | ENA

Ascidia sydneiensis samea

Project description:Transcriptome analysis on blood cells of a vanadium-rich ascidian

| PRJDB8225 | ENA

The Ascidia <i>Ciona robusta</i> Provides Novel Insights on the Evolution of the AP-1 Transcriptional Complex.

Project description:The Activator Protein-1 transcription factor family (AP-1) transcriptional complex is historically defined as an early response group of transcription factors formed by dimeric complexes of the Jun, Fos, Atf, and Maf bZIP proteins that control cell proliferation and differentiation by regulating gene expression. It has been greatly investigated in many model organisms across metazoan evolution. Nevertheless, its complexity and variability of action made its multiple functions difficult to be defined. Here, we place the foundations for understanding the complexity of AP-1 transcriptional members in tunicates. We investigated the gene members of this family in the ascidian Ciona robusta and identified single copies of Jun, Fos, Atf3, Atf2/7, and Maf bZIP-related factors that could have a role in the formation of the AP-1 complex. We highlight that mesenchyme is a common cellular population where all these factors are expressed during embryonic development, and that, moreover, Fos shows a wider pattern of expression including also notochord and neural cells. By ectopic expression in transgenic embryos of Jun and Fos genes alone or in combination, we investigated the phenotypic alterations induced by these factors and highlighted a degree of functional conservation of the AP-1 complex between Ciona and vertebrates. The lack of gene redundancy and the first pieces of evidence of conserved functions in the control of cell movements and structural organization exerted by these factors open the way for using Ciona as a helpful model system to uncover the multiple potentialities of this highly complex family of bZIP transcription factors.

| S-EPMC8369891 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data