Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Transcriptome sequencing analysis of Chinese sturgeon embryos

PROVIDER: PRJNA912564 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR22859074_1.fastq.gz	Fastqsanger.gz
	SRR22859074_2.fastq.gz	Fastqsanger.gz
	SRR22859075_1.fastq.gz	Fastqsanger.gz
	SRR22859075_2.fastq.gz	Fastqsanger.gz
	SRR22859076_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 18

Similar Datasets

Transcriptome profiling reveals cleft palate-related genes in Chinese sturgeon (Acipenser sinensis)

Project description:The Chinese sturgeon (Acipenser sinensis) is anadromous fish distributed in Yangtze River and East China Sea. In this study, we reported cleft-palate Chinese sturgeons in artificial population for the first time. In order to explore the genetic basis of palate malformation in A. sinensis, Illumina RNA-seq technology was used to analyze the transcriptome data of normal and cleft-palate individuals in farmed Chinese sturgeons. Raw reads were obtained and assembled into 808,612 unigenes, with an average length of 509.33 bp and an N50 of 574 bp. Sequence similarity analyses against four public databases (Nr, Uniprot, KEGG and COGs) found 158,642 unigenes that can be annotated. GABAergic synapse and TGF-β signal pathway were the most two enriched pathways with high Richfactor in the analyses of different expressed genes. In these two signal pathways, six genes (GABRA4, GS, GNS, S6K, PITX2, and BMP8) were found as cleft-palate genes in Chinese sturgeon. These findings contribute to our understanding of the genetic basis of cleft palate in sturgeon, while simultaneously adding to our knowledge about craniofacial development.

2018-03-24 | GSE112292 | GEO

Project description:Transcriptome sequencing of Chinese sturgeon skin cell line incubated with Chinese sturgeon interferon f

| PRJNA1189284 | ENA

Project description:RNA sequencing of Chinese sturgeon

| PRJNA763050 | ENA

Project description:Gonad sequencing of Chinese sturgeon

| PRJNA1146069 | ENA

Project description:Transcriptome analysis of ovarian maturation in Chinese sturgeon Acipenser sinensis

| PRJNA533873 | ENA

Project description:Chinese sturgeon genetic map

| PRJNA359591 | ENA

Effects of different fat source diets on the transcriptome of brain, liver and spleen in Yangze sturgeon

Project description:Nutrition is an important part of the protection process of Yangze sturgeon. This study tested the transcriptome levels of brain, liver and spleen after feeding different fat source diets to Yangze sturgeon.

2021-07-29 | GSE136237 | GEO

Project description:RNA-seq of Chinese sturgeon

| PRJNA763252 | ENA

Project description:Chinese sturgeon genetic map construction

| PRJNA357874 | ENA

Project description:Iso-seq of Chinese sturgeon

| PRJNA762993 | ENA