Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: tumor tissue single-cell RNA Sequencing

PROVIDER: PRJNA918416 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR22975130.fastq.gz	Fastqsanger.gz
	SRR22975131.fastq.gz	Fastqsanger.gz
	SRR22995959.fastq.gz	Fastqsanger.gz
	SRR22995960.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

Single-cell RNA sequencing data of human craniopharyngioma tumor tissue

Project description:Single-cell RNA sequencing data of human craniopharyngioma tumor tissue

| PRJNA1236830 | ENA

Single Cell RNA Sequencing of Metastatic Adrenocortical Carcinoma and Tumor-Free Tissue.

Project description:Single Cell RNA Sequencing of Metastatic Adrenocortical Carcinoma and Tumor-Free Tissue.

| PRJNA1241336 | ENA

Single Cell RNA Sequencing of Metastatic Adrenocortical Carcinoma and Tumor-Free Tissue.

Project description:Single Cell RNA Sequencing of Metastatic Adrenocortical Carcinoma and Tumor-Free Tissue.

| PRJNA1241337 | ENA

Study on change of PBMC and tumor local immune map in colon cancer patients before and after general anesthesia based on single cell transcriptome sequencing

Project description:Interventions: Sevoflurane group:Nil;Propofol group:NIl Primary outcome(s): Heterogeneity of immune cell RNA spectrum in local tissue and peripheral blood of tumor Study Design: Non randomized control

| 2706736 | ecrin-mdr-crc

Benary2021 - tissue dynamics of the hepato-pancreato-biliary organ system

Project description:Single cell-based studies have revealed tremendous cellular heterogeneity in stem cell and progenitor compartments, suggesting continuous differentiation trajectories with intermixing of cells at various states of lineage commitment and notable degree of plasticity during organogenesis. The hepato-pancreato-biliary organ system relies on a small endoderm progenitor compartment that gives rise to a variety of different adult tissues, including liver, pancreas, gallbladder, and extra-hepatic bile ducts. Experimental manipulation of various developmental signals in the mouse embryo underscored important cellular plasticity in this embryonic territory. This is also reflected in the existence of human genetic syndromes as well as congenital or environmentally-caused human malformations featuring multiorgan phenotypes in liver, pancreas and gallbladder. Nevertheless, the precise lineage hierarchy and succession of events leading to the segregation of an endoderm progenitor compartment into hepatic, biliary, and pancreatic structures are not yet established. Here, we combine computational modelling approaches with genetic lineage tracing to assess the tissue dynamics accompanying the ontogeny of the hepato-pancreato-biliary organ system. We show that a multipotent progenitor domain persists at the border between liver and pancreas, even after pancreatic fate is specified, contributing to the formation of several organ derivatives, including the liver. Moreover, using single-cell RNA sequencing we define a specialized niche that possibly supports such extended cell fate plasticity.

2021-07-01 | MODEL2105030001 | BioModels

Loss of 5-hydroxymethylcytosine is linked to gene body hypermethylation in kidney cancer

Project description:Aberrant DNA methylation is common in cancer. To associate DNA methylation with gene function, we performed RNAseq upon tumor tissue and matched normal tissues of two ccRCC (clear cell renal cell carcinoma) patients. To quantify 5mC and 5hmC level in each CG site at genome-wide level, we performed BS-seq and TAB-seq upon tumor tissue and matched normal tissues of two ccRCC (clear cell renal cell carcinoma) patients, respectively. mRNA profiles of tumor and matched normal tissues from two ccRCC patients were generated by deep sequencing, using Hiseq 2000. Single-nucleotide-resolution, whole-genome, 5mC and 5hmC profiles of tumor and matched normal tissues from two ccRCC (clear cell renal cell carcinoma) patients were generated by deep sequencing, using Hiseq 2000.

2016-02-29 | E-GEOD-63183 | biostudies-arrayexpress

Single Cell RNAseq on Renal adenocarcinoma

Project description:We used droplet based Single cell RNA sequencing (10x genomics) on sorted cell from tumor and juxta tumor tissue to explore myeloid cell diversity and metabolism in tumor microenvironement

2020-11-16 | GSE159913 | GEO

Comparison of single-nucleus and single-cell transcriptomes in hepatocellular carcinoma tissue

Project description:In the present study, scRNA-seq(single-cell RNA sequencing) was compared with snRNA-seq(single-nucleus RNA sequencing) in tumor tissue obtained from patients with HCC, using the 10X Genomics Chromium platform.

2022-08-09 | GSE210679 | GEO

Single-cell RNA sequencing reveals tissue compartment-specific plasticity of mycosis fungoides tumor cells

Project description:Single-cell RNA sequencing reveals tissue compartment-specific plasticity of mycosis fungoides tumor cells

| PRJNA695230 | ENA

Parallel single cell and bulk transcriptome analyses reveal key features of the gastric tumor microenvironment

Project description:We used single-cell RNA-sequencing from tumors and matched normal tissue of 24 treatment-naïve patients to generate a single cell landscape of gastric cancer tumor microenvironment.

2022-09-30 | GSE206785 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data