Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Whole genome sequencing for the Eastern oyster (Crassostrea virginica) for SNP array design

PROVIDER: PRJNA933941 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR23424200_1.fastq.gz	Fastqsanger.gz
	SRR23424200_2.fastq.gz	Fastqsanger.gz
	SRR23424300_1.fastq.gz	Fastqsanger.gz
	SRR23424300_2.fastq.gz	Fastqsanger.gz
	SRR23424400_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 870

Similar Datasets

Project description:ddRAD of eastern oyster (Crassostrea virginica)

| PRJNA789883 | ENA

Affymetrix SNP array data for the Pacific oyster

Project description:The Pacific oyster (Crassostrea gigas) is a kind of marine bivalve of great economic and ecological importance and is among the animals possessing the highest level of genome DNA variations. Despite large efforts made for the discovery of Pacific oyster SNPs in many research groups, challenge still remains as how to utilize SNPs in a high-throughput, transferable and economical manner. In the study, we constructed an oyster 190K SNP array with Affymetrix Axiom genotyping technology. A total of 190,420 SNPs were designed on the chip, which were selected from 54 M SNPs identified by re-sequencing of more than 400 Pacific oysters. Genotyping results from 96 wild oysters indicated that 133,984 (70.4%) SNPs were polymorphic and successfully converted on the chip. Carrying 133K polymorphic SNPs, the oyster 190K SNP array is the first high density SNP chip with the largest throughput currently in mollusc and is commercially available to the worldwide research community.

2017-03-22 | GSE94633 | GEO

Project description:Mantle transcriptome of eastern oyster Crassostrea virginica

| PRJNA762101 | ENA

Project description:Exome Capture of the Eastern oyster, Crassostrea virginica

| PRJNA699020 | ENA

Effect of cyclic dinucleotides produced by cGAS-like receptors on gene expression in Crassostrea virginica

Project description:We performed transcriptime analysis (RNA-seq) in the stony coral Crassostrea virginica treated with different nucleotide messengers produced by cGLRs.

2023-06-27 | GSE232087 | GEO

Transcriptome sequencing of Pacific oyster Crassostrea gigas

Project description:Deep sequencing of mRNA from Pacific oyster Crassostrea gigas

2014-07-26 | GSE31011 | GEO

miRNA of Pacific oyster Crassostrea gigas for different organs and developmental stages

Project description:miRNA sequencing of Pacific oyster Crassostrea gigas for different organs and developmental stages.

2014-07-26 | GSE31009 | GEO

Project description:Transcriptomic signatures of temperature adaptation in the eastern oyster Crassostrea virginica

| PRJNA719567 | ENA

RNA-seq of Pacific oyster Crassostrea gigas under different developmental stages and stress treatments

Project description:Deep sequencing of samples from different development stages, different adult organs and different stress treatments of Pacific oyster Crassostrea gigas

2012-09-13 | GSE31012 | GEO

Project description:Sex-specific gene expression in eastern oyster (Crassostrea virginica) gonad and mantle

| PRJNA1018915 | ENA