Vertebrata
Ontology highlight
ABSTRACT:
PROVIDER: PRJNA947503 | ENA |
REPOSITORIES: ENA
Similar Datasets
Project description:Chinese and Philippine strains of the blood fluke Schistosoma japonicum present clear and distinctive phenotypes in areas of fecundity, pathology, drug sensitivity and immunology. Despite these differences large scale sequencing efforts have focused solely on Chinese mainland strain of the parasite. We have undertaken a comparative genomic hybridisation (CGH) approach to highlight some of the structural differences in the genome of two of the major geographical isolates of S. japonicum. We identified seven distinct regions of the S. japonicum genome that present differential CGH between Chinese and Philippine strains of the blood fluke Schistosoma japonicum, representing either deletion or duplication regions in the Philippine strain. Within these regions, genes that may be related to phenotypical differences are identified and discussed.
2012-07-14 | GSE39329 | GEO
Project description:Chinese and Philippine strains of the blood fluke Schistosoma japonicum present clear and distinctive phenotypes in areas of fecundity, pathology, drug sensitivity and immunology. Despite these differences large scale sequencing efforts have focused solely on Chinese mainland strain of the parasite. We have undertaken a comparative genomic hybridisation (CGH) approach to highlight some of the structural differences in the genome of two of the major geographical isolates of S. japonicum. We identified seven distinct regions of the S. japonicum genome that present differential CGH between Chinese and Philippine strains of the blood fluke Schistosoma japonicum, representing either deletion or duplication regions in the Philippine strain. Within these regions, genes that may be related to phenotypical differences are identified and discussed. Genomic DNA was isolated from adult (7 week post cercarial challenge) Schistosoma japonicum Chinese and Philippine isolates and separate maleand femalesamples comparatively hybridised on an Agilent customn designed oligo microarray.
2012-07-13 | E-GEOD-39329 | biostudies-arrayexpress
Project description:CREST metabarcoding approach to biodiversity monitoring of fishes
| PRJDB3526 | ENA
Project description:BackgroundSeveral lists of marine fish from Azores have been published in the past. Most of those publications are difficult to access on line and several were not published in peer-reviewed journals.New informationThis checklist updates all the chondrichthyan records for the Azores Exclusive Economic Zone (EEZ), according to the most recent taxonomic classification of cartilaginous fish, as well as providing information on the conservation status for all species. We also present recent literature data on rare species and recent records for Azores. This is the first comprehensive list of cartilaginous fishes from Azores to be published in the GBIF database.
| S-EPMC9848621 | biostudies-literature
Project description:Marine sediments harbor highly diverse microbial communities that contribute to global biodiversity and play essential roles in the ecosystem functioning. However, the metaproteome of marine sediments remains poorly understood. Extracting proteins from environmental samples can be challenging, especially in marine sediments due to their complex matrix. Few studies have been conducted on improving protein extraction methods from marine sediments. To establish an effective protein extraction workflow for clay-rich sediments, we compared, combined and improved several protein extraction methods. The presented workflow includes blocking of protein binding sites on sediment particles with high concentrations of amino acids, effective cell lysis via ultra-sonication, and the electro-elution and simultaneous fractionation of proteins. Using this workflow, we were able to recover 100% of the previously added Escherichia coli proteins from the sediment.
2025-05-12 | PXD054260 | Pride
Project description:Many divergent jawed vertebrate species Targeted Locus (Loci)
| PRJNA267484 | ENA
Project description:Pilot ENCODE targeted sequencing of vertebrate genomic regions
| PRJNA63413 | ENA