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ABSTRACT: Transcriptome of healthy and wilt diseased cumin plants

PROVIDER: PRJNA949548 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR24007815.fastq.gz	Fastqsanger.gz
	SRR24007816.fastq.gz	Fastqsanger.gz
	SRR24007817.fastq.gz	Fastqsanger.gz
	SRR24007818.fastq.gz	Fastqsanger.gz
	SRR24007819.fastq.gz	Fastqsanger.gz

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Project description:Investigation of whole genome gene expression level changes in the bacterial wilt pathogen Ralstonia solanacearum, strain UW551 at 20°C and 28°C in culture and in planta. The temperatel strain UW551 can wilt and cause full-blown disease on tomato plants at 28°C as well as at 20°C. A 16 array study using total RNA recovered from the following: 8 separate cultures of Ralstonia solanacearum strain UW551 grown in rich medium-CPG (4 grown at 20°C and 4 grown at 28°C) 8 separate in planta samples of Ralstonia solanacearum strain UW551 harvested from diseased tomato plants cv. BonnyBest (4 recovered from plants grown at 20°C and 4 from plants grown at 28°C) Each array (4-plex format) measures the expression level of 4318 genes from Ralstonia solanacearum strain UW551 with 2 to 6, 40-70 mer probes per gene, with two-fold technical redundancy. The arrays also contain probes for intergenic regions with no technical replicates.

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