Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Unique territorial and sub-chromosomal organization revealed in the holocentric moth Bombyx mori [RNA-seq]

ABSTRACT: Unique territorial and sub-chromosomal organization revealed in the holocentric moth Bombyx mori [RNA-seq]

PROVIDER: PRJNA949630 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR23995241_1.fastq.gz	Fastqsanger.gz
	SRR23995241_2.fastq.gz	Fastqsanger.gz
	SRR25990341_1.fastq.gz	Fastqsanger.gz
	SRR25990341_2.fastq.gz	Fastqsanger.gz
	SRR25990342_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

Unique territorial and sub-chromosomal organization revealed in the holocentric moth Bombyx mori [RNA-seq]

Project description:Genome organization in diverse eukaryotes follows conserved principles including the formation of chromosome territories (CT), chromatin compartments, and TADs. Here, we describe the 3D architecture of holocentric chromosomes in the silkworm Bombyx mori. At the genome-wide scale, B. mori chromosomes are highly territorial lacking any visible trans contact pattern. At the chromosomal scale, B. mori chromosomes segregate into three chromatin compartments: an active A and an inactive B as described in other eukaryotes, and a third type, X, with a unique contact pattern. Compartment X is strongly enriched for short-range interactions and depleted of long-range interactions, hosts a specific combination of genetic and epigenetic features and localizes towards the periphery of CT. Biophysical simulations reveal the necessity of the combined effects of affinity-based compartmentalization and activity-based loop extrusion to lead to the unique interaction patterns observed. Our analyses contribute to our understanding how chromosomes fold highlighting the evolutionary plasticity of 3D genome organization.

2023-09-17 | GSE228398 | GEO

Unique territorial and sub-chromosomal organization revealed in the holocentric moth Bombyx mori [ChIP-seq]

2023-09-17 | GSE228397 | GEO

Unique territorial and sub-chromosomal organization revealed in the holocentric moth Bombyx mori [Hi-C head]

2023-09-17 | GSE228399 | GEO

Unique territorial and sub-chromosomal organization revealed in the holocentric moth Bombyx mori [Hi-C embryo]

2023-09-17 | GSE228400 | GEO

Unique territorial and sub-chromosomal organization revealed in the holocentric moth Bombyx mori

Project description:Unique territorial and sub-chromosomal organization revealed in the holocentric moth Bombyx mori

| PRJNA949627 | ENA

Unique territorial and sub-chromosomal organization revealed in the holocentric moth Bombyx mori [ChIP-seq]

Project description:Unique territorial and sub-chromosomal organization revealed in the holocentric moth Bombyx mori [ChIP-seq]

| PRJNA949631 | ENA

Unique territorial and sub-chromosomal organization revealed in the holocentric moth Bombyx mori [Hi-C embryo]

Project description:Unique territorial and sub-chromosomal organization revealed in the holocentric moth Bombyx mori [Hi-C embryo]

| PRJNA949632 | ENA

Unique territorial and sub-chromosomal organization revealed in the holocentric moth Bombyx mori [Hi-C head]

Project description:Unique territorial and sub-chromosomal organization revealed in the holocentric moth Bombyx mori [Hi-C head]

| PRJNA949633 | ENA

Unique territorial and sub-chromosomal organization revealed in the holocentric moth Bombyx mori

Project description:This SuperSeries is composed of the SubSeries listed below.

2023-09-17 | GSE228401 | GEO

Complete dosage compensation and sex-biased gene expression in Manduca sexta

Project description:Using 4 replicate males and 4 replicate females this experiment examined dosage compensation and sex-biased gene expression. Briefly we performed a de novo assembly of the Manduca sexta transcriptome using all sequenced libraries, quantified genes expression, identified the physical locations of genes through orthology to the moth Bombyx mori and examine expression differences between autosomal and Z-linked genes between males and females. Further, we examined sex-biased gene expression using the replicated data.

2014-03-18 | E-MTAB-2066 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data