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ABSTRACT: Differential gene expression Acropora cervicornis

PROVIDER: PRJNA949884 | ENA |

REPOSITORIES: ENA

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Dataset's files

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			Action	DRS
	SRR24002812.fastq.gz	Fastqsanger.gz
	SRR24002813.fastq.gz	Fastqsanger.gz
	SRR24002814.fastq.gz	Fastqsanger.gz
	SRR24002815.fastq.gz	Fastqsanger.gz
	SRR24002816.fastq.gz	Fastqsanger.gz

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Direct histone proteoform profiling of the unannotated, endangered coral Acropora cervicornis

Project description:Epigenetic modifications directly regulate the patterns of gene expression by altering DNA accessibility and chromatin structure. A knowledge gap is presented by the need to directly measure these modifications, especially for unannotated organisms with unknown primary histone sequences. In the present work, we developed and applied a novel workflow for identifying and annotating histone proteoforms directly from mass spectrometry-based measurements for the endangered Caribbean coral Acropora cervicornis. Combining high accuracy de novo top-down and bottom-up analysis based on tandem liquid chromatography, trapped ion mobility spectrometry, non-ergodic electron-based fragmentation, and high-resolution mass spectrometry, near complete primary sequence (up to 99%) and over 86 post-translational modification annotations were obtained from pull-down histone fractions. In the absence of reliable genome annotations, H2A, H2B and H4 histone sequences and the annotation of the post-translational modifications of the stressed A. cervicornis coral allow for a better understanding of chromatin remodeling and new strategies for target intervention and restoration of endangered reef corals.

2025-01-07 | MSV000096788 | MassIVE

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