Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Deciphering lineage specification during early embryogenesis in mouse gastruloids using integrative multi-layered proteomics [ChIP-seq]

ABSTRACT: Deciphering lineage specification during early embryogenesis in mouse gastruloids using integrative multi-layered proteomics [ChIP-seq]

PROVIDER: PRJNA952584 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR24083850_1.fastq.gz	Fastqsanger.gz
	SRR24083850_2.fastq.gz	Fastqsanger.gz
	SRR24083851_1.fastq.gz	Fastqsanger.gz
	SRR24083851_2.fastq.gz	Fastqsanger.gz
	SRR24083852_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 28

Similar Datasets

Deciphering lineage specification during early embryogenesis in mouse gastruloids using integrative multi-layered proteomics

Project description:Deciphering lineage specification during early embryogenesis in mouse gastruloids using integrative multi-layered proteomics

| PRJNA952600 | ENA

Deciphering lineage specification during early embryogenesis in mouse gastruloids using integrative multi-layered proteomics [RNA]

Project description:Gastrulation is a critical stage of embryonic development during which the three germ layers are established. Deciphering the molecular mechanisms underlying this proces from a protein perspective remains a significant challenge. To address this, we employed a multilayered mass spectrometry-based proteomics approach to investigate the global dynamics of (phospho)protein expression during differentiation of ESCs towards gastruloids – an in vitro model of gastrulation-stage embryogenesis. Our findings revealed that many proteins exhibited temporal expression with unique expression profiles corresponding to the three germ layers. Additionally, we profiled enhancer interaction landscapes in ESCs and gastruloids using p300 proximity labeling, which revealed numerous gastruloid-specific transcription factors and chromatin remodelers. Subsequent degron based perturbations combined with scRNA-seq revealed a critical role for Zeb2 in regulating mouse and human somitogenesis. Overall, this study provides a rich resource for developmental and synthetic biology communities endeavoring to understand mammalian embryogenesis.

2024-05-21 | GSE229025 | GEO

Deciphering lineage specification during early embryogenesis in mouse gastruloids using integrative multi-layered proteomics [scRNA-seq]

2024-05-21 | GSE229028 | GEO

Deciphering lineage specification during early embryogenesis in mouse gastruloids using integrative multi-layered proteomics [ChIP-seq]

2024-05-21 | GSE229024 | GEO

Deciphering lineage specification during early embryogenesis in mouse gastruloids using integrative multi-layered proteomics [RNA]

Project description:Deciphering lineage specification during early embryogenesis in mouse gastruloids using integrative multi-layered proteomics [RNA]

| PRJNA952608 | ENA

Deciphering lineage specification during early embryogenesis in mouse gastruloids using integrative multi-layered proteomics [scRNA-seq]

Project description:Deciphering lineage specification during early embryogenesis in mouse gastruloids using integrative multi-layered proteomics [scRNA-seq]

| PRJNA952609 | ENA

Deciphering lineage specification during early embryogenesis using multi-layered proteomics

Project description:Gastrulation is a critical stage of embryonic development during which the three germ layers are established. Deciphering the molecular mechanisms underlying this process from a protein perspective remains a significant challenge. To address this, we employed a multilayered mass spectrometry-based proteomics approach to investigate the global dynamics of (phospho)protein expression during differentiation of ESCs towards gastruloids – an in vitro model of gastrulation-stage embryogenesis. Our findings revealed that many proteins exhibited temporal expression during gastrulation with unique expression profiles corresponding to the three germ layers, which we also validated using an ultra sensitive single cell proteomics approachtechnology. Additionally, we profiled enhancer interaction landscapes in ESCs and gastruloids using p300 proximity labeling, which revealed numerous gastruloid-specific transcription factors and chromatin remodelers. Subsequent degron based perturbations combined with scRNA-seq revealed a critical role for Zeb2 in regulating mouse and human somitogenesis. Overall, this study provides a rich resource for developmental and synthetic biology communities endeavoring to understand mammalian embryogenesis.

2024-09-05 | PXD041328 | Pride

Deciphering lineage specification during early embryogenesis using multi-layered proteomics

2024-05-21 | PXD041309 | Pride

Deciphering lineage specification during early embryogenesis using integrative multi-layered proteomics [RNA-Seq]

Project description:Deciphering lineage specification during early embryogenesis using integrative multi-layered proteomics [RNA-Seq]

| PRJNA1060726 | ENA

Deciphering lineage specification during early embryogenesis using integrative multi-layered proteomics [RNA-Seq]

Project description:Gastrulation is a critical stage in embryonic development during which the germ layers are established. The advances and increasing availability of sequencing technologies led to the identification of gene regulatory programs that control the emergence of the germ layers and its derivatives. However, proteome-based studies of early mammalian development are scarce. To overcome this, we utilized gastruloids and a multilayered mass spectrometry-based proteomics approach to investigate the global dynamics of (phospho)protein expression during gastruloid differentiation. Our findings revealed that many proteins exhibit temporal expression with unique expression profiles corresponding to the three germ layers, which we also validated using single-cell proteomics technology. Notably, detected temporal protein expression dynamics in gastruloids aligns with equivalent mouse embryo stages. Additionally, we profiled enhancer interaction landscapes using P300 proximity labeling, which revealed numerous gastruloid-specific transcription factors and chromatin remodelers. Subsequent degron-based perturbations combined with scRNA-seq identified a critical role for ZEB2 in regulating mouse and human somitogenesis. Overall, this study provides a rich resource for developmental and synthetic biology communities endeavoring to understand mammalian embryogenesis.

2024-05-21 | GSE252488 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data