Ontology highlight
ABSTRACT:
PROVIDER: PRJNA957798 | ENA |
REPOSITORIES: ENA
Dataset's files
| Action | DRS | |||
|---|---|---|---|---|
| Other | ||||
| SRR24575380.fastq.gz | Fastqsanger.gz | |||
| SRR24575381.fastq.gz | Fastqsanger.gz | |||
| SRR24575382.fastq.gz | Fastqsanger.gz | |||
| SRR24575383.fastq.gz | Fastqsanger.gz |
Items per page: 5 1 - 5 of 17 |
Similar Datasets
Project description:Lateral gene transfer shapes the distribution of RuBisCO among Candidate Phyla Radiation bacteria and DPANN archaea
| PRJEB29721 | ENA
Project description:Reconstruction of 8 complete and 793 draft genomes from a Candidate Phyla Radiation (CPR)
| PRJNA273161 | ENA
Project description:Polyphasic approach to detect, to isolate and to characterise candidate phyla radiation in human saliva.
| PRJEB72023 | ENA
Project description:DNA methylation is an important regulator of genome function in the eukaryotes, but it is currently unclear if the same is true in prokaryotes. While regulatory functions have been demonstrated for a small number of bacteria, there have been no large-scale studies of prokaryotic methylomes and the full repertoire of targets and biological functions of DNA methylation remains unclear. Here we applied single-molecule, real-time sequencing to directly study the methylomes of 232 phylogenetically diverse prokaryotes. Collectively, we identified 834 methylated motifs, enabling the specific annotation of 415 DNA methyltransferases (MTases), and adding substantially to existing databases of MTase specificities. While the majority of MTases function as components of restriction-modification systems, 139 MTases have no cognate restriction enzyme in the genome, suggesting some other functional role. Several of these âorphanâ MTases are conserved across species and exhibit patterns of DNA methylation consistent with known regulatory MTases. Based on these patterns of methylation, we identify candidate novel regulators of gene expression in several phyla of bacteria, and candidate regulators of DNA replication in Haloarchaea. Together these data substantially advance our knowledge of DNA restriction-modification systems, and hint at a wider role for methylation in prokaryotic genome regulation. Single-molecule, real-time sequencing of DNA modifications across 232 diverse prokaryotic genomes.
2016-01-20 | E-GEOD-69872 | biostudies-arrayexpress
Project description:Switchgrass is currently one of the plant species being investigated as a potential biofuels crop. Genetic manipulation can be used to optimize and improve switchgrass to have more properties better suited for biofuels production. We have conducted a proteome with a focus on the endomembrane system of switchgrass so candidate proteins will be available that can be used for genetic manipulation. This proteomic resource will supplement the developing switchgrass genome sequencing project.
2015-03-12 | PXD001351 | Pride
Project description:The sequencing raw data including 10 different phyla (Acidobacteria, Actinobacteria, Bacteria-unclassified, Bacteroidetes, Candidate-division-TM7, Cyanobacteria, Firmicutes, Fusobacteria, Proteobacteria, Tenericutes) of bacteria and 2 phyla of fungi
| PRJNA296934 | ENA
Project description:the microbe include 10 different phyla (Acidobacteria, Actinobacteria, Bacteria-unclassified, Bacteroidetes, Candidate-division-TM7, Cyanobacteria, Firmicutes, Fusobacteria, Proteobacteria, Tenericutes) of bacteria (Figure 3) and 2 phyla of fungi ( A
| PRJNA295906 | ENA