Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Haplotype-resolved de novo assemblies of two male kiwifruit genomes

PROVIDER: PRJNA957968 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR24236048_subreads.fastq.gz	Fastqsanger.gz
	SRR24236049_subreads.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Actinidia chinensis

Project description:Haplotype-resolved de novo assemblies of two male kiwifruit genomes

| PRJNA1057578 | ENA

Pinopsida

Project description:Haplotype-resolved de novo genome assemblies in four gymnosperm timber trees.

| PRJDB14450 | ENA

Project description:De novo assemblies of Blaberidae genomes

| PRJNA1065107 | ENA

CRISPR-based targeted haplotype-resolved assembly of a megabase region [EPIC]

Project description:Constructing high-quality haplotype-resolved genome assemblies has substantially improved the ability to detect and characterize genetic variants. A targeted approach providing readily access to the rich information from haplotype-resolved genome assemblies will be appealing to groups of basic researchers and medical scientists focused on specific genomic regions. Here, using the 4.5 megabase, notoriously difficult-to-assemble major histocompatibility complex (MHC) region as an example, we demonstrated an approach to construct haplotype-resolved assembly of the targeted genomic region with the CRISPR-based enrichment. Compared to the results from haplotype-resolved genome assembly, our targeted approach achieved comparable completeness and accuracy with reduced computing complexity, sequencing cost, as well as the amount of starting materials. Moreover, using the targeted assembled personal MHC haplotypes as the reference both improves the quantification accuracy for sequencing data and enables allele-specific functional genomics analyses of the MHC region. Given its highly efficient use of resources, our approach can greatly facilitate population genetic studies of targeted regions, and may pave a new way to elucidate the molecular mechanisms in disease etiology.

2022-11-15 | GSE192501 | GEO

CRISPR-based targeted haplotype-resolved assembly of a megabase region [WGBS]

2022-11-15 | GSE192499 | GEO

Project description:Haplotype-resolved female and male genomes

| PRJNA1165335 | ENA

Haplotype-resolved female and male genomes reveal sex-specific genomic regions and provide insights into thermal stress in Scapharca subcrenata

Project description:<p>Integrated analyses of transcriptomic, proteomic and metabolomic data sets consistently highlights the crucial involvement of protein function and retinol metabolism pathways in the heat-resistant strain of S. subcrenata. These findings underscore the significance of these pathways in enabling the strain's ability to withstand high temperatures and adapt to heat stress. The haplotype-resolved female and male genomes and multiomics data presented in this study provide a solid foundation for investigating the molecular mechanisms of sex in S. subcrenata.</p>

2024-11-11 | MTBLS11038 | MetaboLights

haplotype-resolved human genome

Project description:De novo assembly of a haplotype-resolved human genome

| PRJEB8836 | ENA

haplotype-resolved human genome

Project description:De novo assembly of a haplotype-resolved human genome.

| PRJEB7886 | ENA

HGSVC3 - Verkko De Novo Assemblies

Project description:HGSVC3 - Verkko De Novo Assemblies

| PRJEB76276 | ENA