Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Comprehensive insights into the potentially effects of different carbon sources on denitrification

PROVIDER: PRJNA962279 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR24320900_1.fastq.gz	Fastqsanger.gz
	SRR24320900_2.fastq.gz	Fastqsanger.gz
	SRR24320901_1.fastq.gz	Fastqsanger.gz
	SRR24320901_2.fastq.gz	Fastqsanger.gz
	SRR24320902_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 64

Similar Datasets

Project description:Community Structure of Denitrification Systems with Different Carbon Sources

| PRJNA1076543 | ENA

Project description:Effects of PVC MPs on TCS removal in heterotrophic denitrification systems with different carbon sources

| PRJNA813215 | ENA

Project description:Effects of different carbon sources on microbial community

| PRJNA661130 | ENA

activated sludge metagenome

Project description:The partial denitrification and anammox across different carbon sources Raw sequence reads

| PRJNA900445 | ENA

Project description:Microbial degradation of different carbon sources

| PRJNA592464 | ENA

Expression profiling analysis of fungus Penicillium oxalicum wild type strain and its Podot1 deletion strain.

Project description:The goals of this study are to compare different gene expressions for Penicillium oxalicum wild type strain (WT), and Podot1 knockout strain (ΔPodot1) in different carbon sources. The deletion of Podot1 downregulated genes involved in the septin complex, extracellular region, and interspecies interaction between organisms when strains were cultivated with 2% glucose as carbon sources, and downregulated genes involved in cellulase activity, cellulose binding, glucosidase activity, and polysaccharide catabolic process when strains were cultivated with 1% microcrystalline cellulose and 1% wheat bran as carbon sources. We find the extracellular region was downregulated under both different carbon sources in ΔPodot1. This study provides the information that PoDot1 function are required in mycelial development and hydrolase activity of P. oxalicum.

2019-08-29 | GSE136585 | GEO

Project description:Insights into the life-cycle of partial denitrification granular sludge with different carbon sources: nitrite accumulation performance, granule properties and microbial community

| PRJNA1214019 | ENA

Emergence and disruption of cooperativity in a denitrifying microbial community

Project description:Anthropogenic perturbations to the nitrogen cycle, primarily through use of synthetic fertilizers, is driving an unprecedented increase in the emission of nitrous oxide (N2O), a potent greenhouse gas, and an ozone depleting substance, causing urgency in identifying the sources and sinks of N2O. Microbial denitrification is a primary contributor to the biotic production of N2O in anoxic regions of soil, marine systems, and wastewater treatment facilities. Here, through comprehensive genome analysis, we show that pathway partitioning is a ubiquitous mechanism of complete denitrification by microbial communities. We have further investigated the mechanisms and consequences of process partitioning through detailed physiological characterization and kinetic modeling of a synthetic community of Rhodanobacter R12 and Acidovorax 3H11. We have discovered that these two bacterial isolates from a heavily NO3- contaminated superfund site complete denitrification through the exchange of nitrite (NO2-) and nitric oxide (NO). Our findings further demonstrate that cooperativity within this denitrifying community emerges through process partitioning of denitrification and other processes, including amino acid metabolism. We demonstrate that certain contexts, such as high NO3-, cause unbalanced growth of community members, due to differences in their substrate utilization kinetics and inter-enzyme competition. The altered growth characteristics of community members drives accumulation of toxic NO2- , which disrupts denitrification causing N2O off gassing.

2025-06-18 | GSE272493 | GEO

biofilm metagenome

Project description:biofilm metagenome Raw sequence reads three carbon sources for denitrification

| PRJNA380320 | ENA

Transcriptomic analysis of fungus Penicillium oxalicum and its set2 deletion strains

Project description:The goals of this study are to compare different gene expressions for Penicillium oxalicum wild type strain (WT), and set2 knockout strain (Δset2) in different carbon sources. The deletion of set2 upregulated genes involved in oxidation- reduction process, extracellular region, and plasma membrane ATP synthesis coupled proton transport both with 2% glucose or 1% cellulose and 1% wheat bran as carbon sources. We find the expression levels of 20 secondary metabolism gene clusters were upregulated or downregulated under different carbon sources in Δset2. This study provides the information that SET2 function are required in conidiation and hydrolase activity of P. oxalicum.

2017-11-07 | GSE106558 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data