Global gene expression analyses of channel catfish after being fed diets with inclusion of frass from black soldier fly larvae
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ABSTRACT:
PROVIDER: PRJNA970035 | ENA |
REPOSITORIES: ENA
Dataset's files
| Action | DRS | |||
|---|---|---|---|---|
| SRR24462141_1.fastq.gz | Fastqsanger.gz | |||
| SRR24462141_2.fastq.gz | Fastqsanger.gz | |||
| SRR24462142_1.fastq.gz | Fastqsanger.gz | |||
| SRR24462142_2.fastq.gz | Fastqsanger.gz | |||
| SRR24462143_1.fastq.gz | Fastqsanger.gz |
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Project description:Frass is the by-product of the larval meal industry and includes larval waste, exoskeleton sheds, and residual feed ingredients. Experimental frass was derived from the larvae of black solder flies (Hermetia illucens) fed distillers dried grains. A 10-week study was conducted to evaluate the effect of dietary levels of frass on the global gene expression of channel catfish, Ictalurus punctatus. Three diets containing 0, 50, and 300 g frass per kg diet were fed to channel catfish (5.24 ± 0.04 g) in quadruplicate aquaria to apparent satiation twice daily. Intestine (n=12 in pools of 3) and liver (n=12 in pools of 3) tissues were taken from fish at the end of the trial and processed for high-throughput Illumina RNA sequencing (RNAseq). Pairwise comparisons identified both up- and down-regulated genes in frass diets compared to no frass controls.
2024-01-31 | GSE231874 | GEO
Project description:The larval waste, exoskeleton shedding, and leftover feed components of the black soldier fly and its larvae make up the by-product known as frass. In this study, we subjected channel catfish (Ictalurus punctatus) to a 10-week feeding trial to assess how different dietary amounts of frass inclusion would affect both systemic and mucosal tissue gene expression, especially in regard to growth and immune-related genes. Fish were divided in quadruplicate aquaria, and five experimental diets comprising 0, 50, 100, 200, and 300 g of frass per kilogram of feed were fed twice daily. At the end of the trial, liver, head kidney, gill, and intestine samples were collected for gene expression analyses. First, liver and intestine samples from fish fed with a no frass inclusion diet (control), low-frass (50 g/kg) inclusion diet, or a high-frass (300 g/kg) inclusion diet were subjected to Illumina RNA sequencing to determine global differential gene expression among diet groups. Differentially expressed genes (DEGs) included the upregulation of growth-related genes such as glucose-6-phosphatase and myostatin, as well as innate immune receptors and effector molecules such as toll-like receptor 5, apolipoprotein A1, C-type lectin, and lysozyme. Based on the initial screenings of low/high frass using RNA sequencing, a more thorough evaluation of immune gene expression of all tissues sampled, and all levels of frass inclusion, was further conducted. Using targeted quantitative PCR panels for both innate and adaptive immune genes from channel catfish, differential expression of genes was identified, which included innate receptors (TLR1, TLR5, TLR9, and TLR20A), proinflammatory cytokines (IL-1β type a, IL-1β type b, IL-17, IFN-γ, and TNFα), chemokines (CFC3 and CFD), and hepcidin in both systemic (liver and head kidney) and mucosal (gill and intestine) tissues. Overall, frass from black soldier fly larvae inclusion in formulated diets was found to alter global gene expression and activate innate and adaptive immunity in channel catfish, which has the potential to support disease resistance in this species in addition to demonstrated growth benefits.
| S-EPMC10803510 | biostudies-literature
Project description:frass, soil and pakchoi Raw sequence reads
| PRJNA865399 | ENA
Project description:The soldier fly is an endemic pest of sugarcane in Australia. Small numbers of larvae can cause significant damage to roots and reduce the crop yields. Little is known about the composition and function of the soldier fly salivary gland, its secretions, and their roles in insect-plant interactions. In this study, we performed transcriptome analysis of the salivary glands of starved and sugarcane root-fed soldier fly larvae. A total of 31,119 highly expressed assembled contigs were identified in the salivary glands and almost 50% of them showed high levels of similarity to known proteins in Nr databases. Of all the obtained contigs, only 9,727 sequences contain an open reading frame of over 100 amino acids. Around 31% of contigs were predicted to encode secretory proteins, including some digestive and detoxifying enzymes and potential effectors. Some known salivary secreted peptides such as serine protease, cysteine proteinase inhibitors, antimicrobial peptides and venom proteins were among the top 100 highly expressed genes. Differential gene expression analysis revealed significant modulation of 850 transcripts in salivary glands upon exposure to plant roots or starvation stress. Here, we identified some venom proteins which were significantly upregulated in the salivary glands of soldier fly larvae exposed to sugarcane roots. In other insects and nematodes some of these proteins have been used to manipulate host plant defense systems and facilitate the invasion of the host plant. These findings provide a further insight into the identification of potential effector proteins involved in soldier fly- sugarcane interactions.
2022-06-29 | GSE127658 | GEO
Project description:food waste & fish MBM-BSFL frass
| PRJNA758603 | ENA
Project description:Hermetia illucens L., known as Black Soldier Fly (BSF) appear as an opportunity to reuse vegetable by-products, as it is easy to reproduce and can be reared in agricultural side streams, allowing the production of both, animal feed (the larvae, after recycling of the vegetal debris) and soil organic fertilizer (insect frass). Although several organic fertilizers, from long ago, have been used in agriculture, there is yet a paucity of experimental data on the evaluation of the fertilization potential of BSF larvae frass (BSFF). The present study is a contribution to access the agronomic and environmental potential of the BSFF as an organic fertilizer. Within this aim, it was conducted a greenhouse experiment with ryegrass, using seven treatments of BSFF. Under the experimental conditions, the results showed a significant effect of BSFF on the overall ryegrass production, with a steady increase (significant at p ≤ 0.05, as accessed through the Tukey test) up to the treatment with a greater rate of application. In what concerns sustainability of soil productivity, at the end of the experiment, there was also positive indications, namely, a significant increase of OM, P and K, for treatments with higher N endowments, together with a constant increase of dehydrogenase activity, from the control to the higher treatment, which was significant for treatments receiving the higher dose of BSFF.
| S-EPMC7785954 | biostudies-literature
Project description:Livestock and dairy farmers are increasingly required to maintain productivity and profitability while mitigating the environmental harm associated with high-input agriculture. Accordingly, to reduce reliance on synthetic fertilizers, a wide range of organically derived products are being evaluated for their effects on sward growth and forage quality. This study used glasshouse experiments to investigate the responses of four grass species to a novel organic fertilizer derived from the mass production of black soldier fly larvae [Hermetia illucens, HexaFrass™, Meath, Ireland]. Although there was some variability among trials, overall our results indicate that application of HexaFrass produced increased shoot growth of Perennial Ryegrass (PRG; Lolium perenne L.), Timothy (Phleum pratense L.), and Cocksfoot (Dactylis glomerata L.) compared with growth achieved in no-fertilizer control plants. In addition to increases in shoot fresh and dry weight, shoot chlorophyll content was also positively related to the HexaFrass application rate. At nitrogen-equivalent application rates, HexaFrass resulted in lower shoot growth compared with the application of urea, suggesting that the nitrogen contained in HexaFrass may not be immediately plant-available. Of relevance to grazing or silage systems, the addition of HexaFrass resulted in increased shoot regrowth of PRG and Timothy after shoots had been cut. Based on our results, insect-frass-based fertilizers may have a role in low input, organic, and/or regenerative pasture-based livestock systems, although issues may occur due to the relatively high costs and low availability compared with other organic soil amendments such as farmyard manure and slurry.
| S-EPMC11013756 | biostudies-literature
Project description:Black soldier fly larvae meal (BSFL) from Hermetia illucens is a promising alternative protein source in diets for farmed fish. The larvae can efficiently convert low-value organic material into high quality protein in a production cycle with low arable land and freshwater inputs. A few recent studies have shown that BSFL is a suitable protein source for Atlantic salmon (Salmo salar) in smaller controlled experiments. However, industry-relevant field trials conducted under large scale near-commercial conditions over a longer period are lacking. In this study, a feeding trial was performed to evaluate the impact of BSFL on growth performance and health of Atlantic salmon during the grow out phase in seawater, in a commercial site in Vestland county, Norway. A total of 320,000 post-smolt Atlantic salmon were distributed into six duplicate sea cages and fed one of three diets (commercial-like control diet and two test diets partially replacing the protein content of the control diet with 4 % and 8 % defatted BSFL meal) for 21 weeks, until a relevant commercial slaughter size of 4.5-5.0 kg was reached. Health parameters were assessed including histology of the distal intestine (DI), in addition to DI microbiota identification (by 16s rRNA-seq) and salmon RNA-seq of DI and head kidney (HK). The results showed that the inclusion of BSFL meal supported growth performance and had no adverse effect on gut health. The beta diversity of the distal intestine microbiota and the relative abundance of families Lactobacillaceae and the chitinolytic Bacillaceae increased in the fish fed the BSFL diets. Additionally, no histopathological changes were attributable to BSFL meal intake. Results from RNA-seq in DI revealed that BSFL inclusion modulates metabolic processes associated with lipids, the response to estrogens, the activity of immune receptors (to chemokines), phagocytosis and extracellular vesicles. Based on these results, black soldier fly larvae meal is a suitable alternative protein ingredient in inclusions of up to at least 8 % for Atlantic salmon under industrial fish farming conditions.
2024-08-16 | GSE241320 | GEO
Project description:Frass and soil sample of fungi Raw sequence reads
| PRJNA1045327 | ENA