Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Integrative taxonomy of Tethya: description of four new species based on morphology, phylogeny and microbiomes

PROVIDER: PRJNA970968 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR24575669_1.fastq.gz	Fastqsanger.gz
	SRR24575669_2.fastq.gz	Fastqsanger.gz
	SRR24575670_1.fastq.gz	Fastqsanger.gz
	SRR24575670_2.fastq.gz	Fastqsanger.gz
	SRR24575671_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 66

Similar Datasets

microbiome of methane hydrate sediments: Hydrate Ridge

Project description:Gas hydrates, also known as clathrates, are cages of ice-like water crystals encasing gas molecules such as methane (CH4). Despite the global importance of gas hydrates, their microbiomes remain mysterious. Microbial cells are physically associated with hydrates, and the taxonomy of these hydrate-associated microbiomes is distinct from non-hydrate-bearing sites. Global 16S rRNA gene surveys show that members of sub-clade JS-1 of the uncultivated bacterial candidate phylum Atribacteria are the dominant taxa in gas hydrates. The Atribacteria phylogeny is highly diverse, suggesting the potential for wide functional variation and niche specialization. Here, we examined the distribution, phylogeny, and metabolic potential of uncultivated Atribacteria in cold, salty, and high-pressure sediments beneath Hydrate Ridge, off the coast of Oregon, USA, using a combination of 16S rRNA gene amplicon, metagenomic, and metaproteomic analysis. Methods were developed to extract bacterial cellular protein from these sediments, as outlined below. Sample Description Three sediments samples were collected from beneath Hydrate Ridge, off the coast of Oregon, USA. Sediments were cored at ODP site 1244 (44°35.1784´N; 125°7.1902´W; 895 m water depth) on the eastern flank of Hydrate Ridge ~3 km northeast of the southern summit on ODP Leg 204 in 2002 and stored at -80°C at the IODP Gulf Coast Repository. E10H5 sediment is from 68.5 meters below sediment surface interface C1H2 sediment is from 2 meters below sediment surface interface. C3H4 sediment is from 21 meters below sediment surface interface.

2020-01-22 | PXD012479 | Pride

Project description:Integrating qualitative and quantitative morphology with UCEs-based phylogeny to describe four Sicilian endemic Temnothorax species (Hymenoptera, Formicidae)

| PRJNA770978 | ENA

Project description:Taxonomy and description of new species and reclassification of some bacterial strains

| PRJNA816719 | ENA

Leptosilliaceae: untapped hotspot of species and metabolite diversity

Project description:Description of four new Leptosillia species and their secondary metabolites

| PRJEB60926 | ENA

Project description:New species description

| PRJNA369468 | ENA

STUDY new api

Project description:NEW description for new api

| PRJEB46138 | ENA

Project description:Hiding in the valley, rediscovery of Ablepharus alaicus in China, with description of a new national record of lizard: Phylogeny, morphology, natural history notes

| PRJNA1028099 | ENA

Cryptic species in the ant Tapinoma nigerrimum

Project description:Four species within the supercolonial ants of the Tapinoma nigerrimum complex revealed by integrative taxonomy

| PRJEB15536 | ENA

Project description:Halogenase-based phylogeny approach guided Genome mining of new glycopeptide

| PRJNA1188053 | ENA

Acrocephalus Burkina Faso

Project description:New insights into the morphology and taxonomy of the Acrocephalus baeticatus / scirpaceus species complex based on a newly found West African syntopic population.

| PRJEB26839 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data