Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: studies of microbial diversity in compost

PROVIDER: PRJNA972610 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR24556652_1.fastq.gz	Fastqsanger.gz
	SRR24556652_2.fastq.gz	Fastqsanger.gz
	SRR24556653_1.fastq.gz	Fastqsanger.gz
	SRR24556653_2.fastq.gz	Fastqsanger.gz
	SRR24556654_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 30

Similar Datasets

Project description:Compost microbial community diversity

| PRJNA1085190 | ENA

Project description:Compost microbial community diversity

| PRJNA1291954 | ENA

Project description:Microbial Diversity of Backyard Compost

| PRJNA486388 | ENA

Project description:Microbial diversity in compost leachate

| PRJNA429513 | ENA

Project description:Microbial diversity of compost of CMHRs

| PRJNA1159989 | ENA

Project description:Study on microbial diversity of compost

| PRJNA1132696 | ENA

Project description:Microbial community diversity in compost samples

| PRJNA1028626 | ENA

Project description:Microbial diversity in Australian mushroom compost

| PRJNA867030 | ENA

Project description:Sequencing analysis of compost microbial diversity

| PRJNA780088 | ENA

Plant growth in Arabidopsis is assisted by whole soil microbial communities

Project description:Plants in their natural and agricultural environments are continuously exposed to a plethora of diverse microorganisms resulting in microbial colonization of plants in the rhizosphere. This process is believed to be accompanied by an intricate network of ongoing simultaneous interactions. In this study, we compared transcriptional patterns of Arabidopsis thaliana roots and shoots in the presence and absence of whole microbial communities extracted from compost soil. The results show a clear growth promoting effect of Arabidopsis shoots in the presence of soil microbes compared to axenically grown plants under identical conditions. Element analyses showed that iron uptake was facilitated by these mixed microbial communities which also lead to transcriptional downregulation of genes required for iron transport. In addition, soil microbial communities suppressed the expression of marker genes involved in oxidative stress/redox signalling, cell wall modification and plant defense. While most previous studies have focussed on individual plant-microbe interactions, our data suggest that multi-species transcriptional profiling, using simultaneous plant and metatranscriptomics coupled to metagenomics may be required to further increase our understanding of the intricate networks underlying plant-microbe interactions in their diverse environments.

2013-03-09 | GSE44984 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data