Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Microbiome of manta ray organs

PROVIDER: PRJNA973615 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR24619722_1.fastq.gz	Fastqsanger.gz
	SRR24619722_2.fastq.gz	Fastqsanger.gz
	SRR24630872_1.fastq.gz	Fastqsanger.gz
	SRR24630872_2.fastq.gz	Fastqsanger.gz
	SRR24631084_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 8

Similar Datasets

Mobula alfredi

Project description:Population genomics Mobula alfredi (Reef Manta Ray)

| PRJNA885488 | ENA

Project description:Mobula cf. birostris (Atlantic manta ray) genome, sMobBir1

| PRJNA954412 | ENA

Project description:Mobula cf. birostris (Atlantic manta ray) transcriptome, sMobBir1

| PRJNA1218823 | ENA

Project description:Mobula cf. birostris (Atlantic manta ray) genome, sMobBir1, sequence data

| PRJNA1218824 | ENA

Mobula birostris isolate:sMobBir1

Project description:Mobula cf. birostris (Atlantic manta ray) genome, sMobBir1, haplotype 1

| PRJNA924117 | ENA

Mobula birostris isolate:sMobBir1

Project description:Mobula cf. birostris (Atlantic manta ray) genome, sMobBir1, haplotype 2

| PRJNA924118 | ENA

Whole Genome Sequencing of Tongue cancer samples and cell line

Project description:Whole genome sequencing (WGS) of tongue cancer samples and cell line was performed to identify the fusion gene translocation breakpoint. WGS raw data was aligned to human reference genome (GRCh38.p12) using BWA-MEM (v0.7.17). The BAM files generated were further analysed using SvABA (v1.1.3) tool to identify translocation breakpoints. The translocation breakpoints were annotated using custom scripts, using the reference GENCODE GTF (v30). The fusion breakpoints identified in the SvABA analysis were additionally confirmed using MANTA tool (v1.6.0).

2024-02-17 | E-MTAB-12534 | biostudies-arrayexpress

Changes in intestinal permeability and gut microbiota following diet-induced weight loss in patients with metabolic dysfunction-associated steatohepatitis and liver fibrosis

Project description:We explore whether a low-energy diet intervention for Metabolic dysfunction-associated steatohepatitis (MASH) improves liver disease by means of modulating the gut microbiome. 16 individuals were given a low-energy diet (880 kcal, consisting of bars, soups, and shakes) for 12 weeks, followed by a stepped re-introduction to whole for an additional 12 weeks. Stool samples were obtained at 0, 12, and 24 weeks for microbiome analysis. Fecal microbiome were measured using 16S rRNA gene sequencing. Positive control (Zymo DNA standard D6305) and negative control (PBS extraction) were included in the sequencing. We found that low-energy diet improved MASH disease without lasting alterations to the gut microbiome.

2024-12-31 | E-MTAB-14061 | biostudies-arrayexpress

Mobula birostris

Project description:Manta birostris mitochondrial genome sequencing

| PRJNA210733 | ENA

ddRAD sequencing of manta rays

Project description:ddRAD sequencing of manta rays

| PRJEB66437 | ENA