Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Visium Spatial Transcriptomics of a murine model of IPMN

ABSTRACT: Visium Spatial Transcriptomics of a murine model of IPMN

PROVIDER: PRJNA975858 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR24724082.fastq.gz	Fastqsanger.gz
	SRR24724083.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Visium Spatial Transcriptomics of a murine model of IPMN

Project description:Pancreata were collected from two Kras;Gnas mice and analyzed by Visium Spatial Gene Expression to evaluate the transcriptional profile associated with NKX6-2 that was observed in the human IPMN samples.

2023-06-07 | GSE233317 | GEO

Visium Spatial Transcriptomics expression profiles from IPMN samples of the pancreas

Project description:Intraductal Papillary Mucinous Neoplasms (IPMN) are pancreatic mucinous cysts that can progress to cancer. We used spatial transcriptomics to characterize the epithelium and microenvironment of IPMN samples of different grades and histological subtypes.

2023-06-07 | GSE233293 | GEO

Visium Spatial Transcriptomics of IPMN model mice with Kras Gnas mutation

Project description:Visium Spatial Transcriptomics of IPMN model mice with Kras Gnas mutation

| PRJNA1150616 | ENA

Visium Spatial Transcriptomics expression profiles from IPMN samples of the pancreas

Project description:Visium Spatial Transcriptomics expression profiles from IPMN samples of the pancreas

| PRJNA975814 | ENA

Visium Spatial Transcriptomics of IPMN model mice with Kras;Gnas mutation

Project description:Pancreata were collected from two Kras;Gnas mice and analyzed by Visium Spatial Gene Expression to evaluate the transcriptional profile.

2024-09-15 | GSE275405 | GEO

Identification of spatially-resolved markers of malignant transformation in Intraductal Papillary Mucinous Neoplasms. [Visium]

Project description:Spatial transcriptomics characterization of IPMN samples by Visium Gene Expression FFPE

2024-02-15 | GSE229877 | GEO

Spatial transcriptomics of gastric cancers (Visium 10X platform)

Project description:A total of 9 primary gastric cancers (1 pair of primary-metastasis, GC6) analyzed using Visium 10X platform-based spatial transcriptomics.

2023-12-26 | GSE251950 | GEO

10X Visium Spatial transcriptomics of murine colon in steady state and during recovery after DSS colitis

Project description:The limitation of single-cell or bulk transcriptomic profiling is the lack of spatial topographical context. Spatial transcriptomics (ST) allows sequencing of polyadenylated transcripts from a tissue section which can be spatially mapped onto the histological brightfield image using an array of barcoded oligo-dT capturing probes. Using the 10X Visium platform, here, we unbiasedly characterized the spatial transcriptomic landscape of murine colon in steady state and during mucosal healing upon dextran sodium sulfate (DSS) induced injury

2021-12-05 | GSE169749 | GEO

Visium Spatial transcriptomics analysis of human primary colorectal cancer

Project description:To reveal the spatial distribution and the difference gene expression pattern of cancer cells in colorectal cancer, Visium spatial transcriptomics of four CRC patients was applied

2023-03-14 | GSE226997 | GEO

Spatial transcriptomics (Visium, 10x Genomics) data of Duchenne mouse models

Project description:Quadricep sections of 10µm thick were placed on Visium spatial transcriptomics slide to obtain spatial datasets for these skeletal muscle sections

2023-06-28 | GSE199659 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data