Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: ITS sequencing of soil sample in Cotinus coggygria

PROVIDER: PRJNA979102 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR24804233_1.fastq.gz	Fastqsanger.gz
	SRR24804233_2.fastq.gz	Fastqsanger.gz
	SRR24804234_1.fastq.gz	Fastqsanger.gz
	SRR24804234_2.fastq.gz	Fastqsanger.gz
	SRR24804235_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 30

Similar Datasets

Project description:16S rDNA sequencing of soil sample in Cotinus coggygria

| PRJNA979017 | ENA

Project description:ITS sequencing of plant sample in Cotinus coggygria

| PRJNA1089391 | ENA

Cotinus coggygria

Project description:Cotinus coggygria overview

| PRJNA717872 | ENA

Project description:16 S rDNA sequencing of plant sample in Cotinus coggygria

| PRJNA1089384 | ENA

Cotinus coggygria

Project description:Cotinus coggygria Genome sequencing and assembly

| PRJNA678142 | ENA

Cotinus coggygria isolate:Ccog-XS

Project description:Cotinus coggygria isolate:Ccog-XS Genome sequencing

| PRJNA1136182 | ENA

Cotinus coggygria var. pubescens

Project description:Cotinus coggygria var. pubescens Raw sequence reads

| PRJNA1315001 | ENA

Functional environmental genomics of a municipal landfill soil

Project description:We investigated the toxicity of soil samples derived from a former municipal landfill site in the South of the Netherlands, where a bioremediation project is running aiming at reusing the site for recreation. Both an organic soil extract and the original soil sample was investigated using the ISO standardised Folsomia soil ecotoxicological testing and gene expression analysis. The 28 day survival/reproduction test revealed that the ecologically more relevant original soil sample was more toxic than the organic soil extract. Microarray analysis showed that the more toxic soil samples induced gene regulatory changes in twice as less genes compared to the soil extract. Consequently gene regulatory changes were highly dependent on sample type, and were to a lesser extent caused by exposure level. An important biological process shared among the two sample types was the detoxification pathway for xenobiotics (biotransformation I, II and III) suggesting a link between compound type and observed adverse effects. Finally, we were able to retrieve a selected group of genes that show highly significant dose-dependent gene expression and thus were tightly linked with adverse effects on reproduction. Expression of four cytochrome P450 genes showed highest correlation values with reproduction, and maybe promising genetic markers for soil quality. However, a more elaborate set of environmental soil samples is needed to validate the correlation between gene expression induction and adverse phenotypic effects.

2012-04-16 | GSE37154 | GEO

Whole-genome transcriptomic analysis in Sorghum bicolor variety CSV24SS

Project description:We report transcriptome profiling of middle internode tissues from four development stages and three soil moisture readings representing progressive drought stress in sweet sorghum. Sequencing of 14 libraries (two biological replicates for each stage). Each replicate yielded an average of 86 million reads per sample for developmental stages and drought stressed samples yielded an average of 74 million reads per sample .

2023-12-31 | GSE155194 | GEO

Whole-genome transcriptomic analysis from stem internodes in Sorghum bicolor variety ICSV12012

2023-12-31 | GSE178993 | GEO