Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Secondary forests and prokaryotes

PROVIDER: PRJNA992889 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR25208372.fastq.gz	Fastqsanger.gz
	SRR25208373.fastq.gz	Fastqsanger.gz
	SRR25208374.fastq.gz	Fastqsanger.gz
	SRR25208375.fastq.gz	Fastqsanger.gz
	SRR25208376.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 24

Similar Datasets

Project description:Secondary succession of prokaryotes in Everglades agricultural soil

| PRJNA1052413 | ENA

Project description:Soil microorganisms under periods of secondary succession in forests

| PRJNA1100800 | ENA

Quantitative transcriptomics of pheromone biosynthetic midgut and fat body tissues in the mountain pine beetle, Dendroctonus ponderoase Hopkins

Project description:Bark beetles (Coleoptera: Scolytinae) are pests of many forests around the world. The mountain pine beetle (MPB), Dendroctonus ponderosae Hopkins, is a significant pest of western North American pine forests. The MPB is able to overcome the defences of pine trees through pheromone-assisted aggregation that results in a mass attack of host trees. These pheromones, both male and female produced, are believed to be biosynthesized in the midgut and/or fat body of these insects. We have used transcriptomics (RNA-seq) to identify transcripts differentially expressed between sexes and between tissues, with juvenile hormone III treatment, which is known to induce pheromone biosynthesis.

2016-02-04 | GSE69061 | GEO

terrestrial metagenome

Project description:Fungal community compostion in litters and soils collected from larch plantations and adjacent secondary forests

| PRJNA301180 | ENA

terrestrial metagenome

Project description:Bacterial community compostion in litters and soils collected from larch plantations and adjacent secondary forests

| PRJNA300344 | ENA

Role of thiosulfate as a source of energy in the bathypelagic North Atlantic Ocean

Project description:The available energy and carbon sources for prokaryotes in the deep ocean remain still largely enigmatic. Reduced sulfur compounds, such as thiosulfate, are a potential energy source for both auto- and heterotrophic marine prokaryotes. Shipboard experiments performed in the North Atlantic using Labrador Sea Water (~2000 m depth) amended with thiosulfate led to an enhanced prokaryotic dissolved inorganic carbon (DIC) fixation.

2021-04-30 | GSE136729 | GEO

Project description:oat rhizosphere prokaryotes

| PRJNA741188 | ENA

food fermentation metagenome

Project description:Narezushi-fermenting prokaryotes

| PRJDB11636 | ENA

Mariana trench prokaryotes

Project description:Mariana trench prokaryotes

| PRJNA510859 | ENA

The Epigenomic Landscape of Prokaryotes

Project description:DNA methylation is an important regulator of genome function in the eukaryotes, but it is currently unclear if the same is true in prokaryotes. While regulatory functions have been demonstrated for a small number of bacteria, there have been no large-scale studies of prokaryotic methylomes and the full repertoire of targets and biological functions of DNA methylation remains unclear. Here we applied single-molecule, real-time sequencing to directly study the methylomes of 232 phylogenetically diverse prokaryotes. Collectively, we identified 834 methylated motifs, enabling the specific annotation of 415 DNA methyltransferases (MTases), and adding substantially to existing databases of MTase specificities. While the majority of MTases function as components of restriction-modification systems, 139 MTases have no cognate restriction enzyme in the genome, suggesting some other functional role. Several of these âorphanâ MTases are conserved across species and exhibit patterns of DNA methylation consistent with known regulatory MTases. Based on these patterns of methylation, we identify candidate novel regulators of gene expression in several phyla of bacteria, and candidate regulators of DNA replication in Haloarchaea. Together these data substantially advance our knowledge of DNA restriction-modification systems, and hint at a wider role for methylation in prokaryotic genome regulation. Single-molecule, real-time sequencing of DNA modifications across 232 diverse prokaryotic genomes.

2016-01-20 | E-GEOD-69872 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data