Puffinus mauretanicus
Ontology highlight
ABSTRACT:
PROVIDER: PRJNA994242 | ENA |
REPOSITORIES: ENA
Dataset's files
| Action | DRS | |||
|---|---|---|---|---|
| Other | ||||
| SRR17055223_1.fastq.gz | Fastqsanger.gz | |||
| SRR17055223_2.fastq.gz | Fastqsanger.gz | |||
| SRR17231300_1.fastq.gz | Fastqsanger.gz | |||
| SRR17230447_1.fastq.gz | Fastqsanger.gz |
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Similar Datasets
Project description:Puffinus mauretanicus Genome sequencing and assembly
| PRJNA780920 | ENA
Project description:Population genomics of the Balearic Shearwater (Puffinus mauretanicus)
| PRJEB75355 | ENA
Project description:Before visiting or leaving their remote island colonies, seabirds often engage in a behaviour termed 'rafting', where birds sit, often in groups, on the water close to the colony. Despite rafting being a widespread behaviour across many seabird taxa, the functional significance of rafting remains unknown. Here we combine global positioning system (GPS) tracks, observational and wind condition data to investigate correlates of rafting behaviour in Manx shearwaters (Puffinus puffinus) at a large colony on Skomer Island, Wales. We test (1) the influence of wind direction on rafting location and (2) whether raft size changes with respect to wind speed. Our approach further allows us to describe day-night trends in (3) raft distance from shore through time; (4) the number of birds present in the nearshore waters through time; and (5) spatial patterns of Manx shearwater rafts in marine waters adjacent to the breeding colony. We find no evidence that wind direction, for our study period, influences Manx shearwater rafting location, yet raft size marginally increases on windier days. We further find rafting birds closer to the shore at night than during the day. Thus, before sunset, birds form a "halo" around Skomer Island, but this halo disappears during the night as more individuals return from foraging trips and raft nearer the colony on Skomer Island. The halo pattern reforms before sunrise as rafts move away from land and birds leave for foraging. Our results suggest that wind conditions may not be as ecologically significant for rafting locations as previously suspected, but rafting behaviour may be especially important for avoiding predators and cleaning feathers.
| S-EPMC6812691 | biostudies-literature
Project description:Puffinosis is a disease of a range of seabirds characterised by dorsal and ventral blistering of their webbed feet, conjunctivitis, dry necrosis, leg spasticity, head shaking, loss of balance, tremors, and death. It is associated with Manx shearwaters (Puffinus puffinus), frequently affecting chicks within their underground nesting burrows. The aetiology of the disease is unclear but has been attributed to a type-2 coronavirus associated with Neotombicula mites as a potential vector. However, there is some uncertainty given potential laboratory contamination with mouse hepatitis virus and failure to fulfil Koch's postulates, with birds injected with isolates remaining healthy. We describe a detailed case report of puffinosis in a Manx Shearwater covering necropsy, histology, bacteriology, and metagenomics including viral sequencing. We found no evidence of viral infection or parasites. Our results are consistent with an entirely environmental aetiology, with caustic faecal ammonia in damp nesting burrows causing conjunctivitis and foot dermatitis breaking the skin, allowing common soil bacteria (i.e., Flavobacterium, Staphylococcus and Serratia spp., Clostridia perfringens and Enterococcus faecalis) to cause opportunistic infection, debilitating the bird and leading to death. A similar condition (foot pad dermatitis or FPD) has been reported in broiler chickens, attributed to caustic faeces, high humidity, and poor environmental conditions during indoor rearing, preventable by adequate ventilation and husbandry. This is consistent with puffinosis being observed in Shearwater nesting burrows situated in tall, dense, vegetation (e.g., bracken Pteridium aquilinum) but rarely reported in burrows situated in well-ventilated, short coastal grasslands. This proposed environmental aetiology accounts for the disease's non-epizootic prevalence, spatial variation within colonies, and higher frequency in chicks that are restricted to nesting burrows.
| S-EPMC9774697 | biostudies-literature
Project description:The migratory movements of seabirds (especially smaller species) remain poorly understood, despite their role as harvesters of marine ecosystems on a global scale and their potential as indicators of ocean health. Here we report a successful attempt, using miniature archival light loggers (geolocators), to elucidate the migratory behaviour of the Manx shearwater Puffinus puffinus, a small (400 g) Northern Hemisphere breeding procellariform that undertakes a trans-equatorial, trans-Atlantic migration. We provide details of over-wintering areas, of previously unobserved marine stopover behaviour, and the long-distance movements of females during their pre-laying exodus. Using salt-water immersion data from a subset of loggers, we introduce a method of behaviour classification based on Bayesian machine learning techniques. We used both supervised and unsupervised machine learning to classify each bird's daily activity based on simple properties of the immersion data. We show that robust activity states emerge, characteristic of summer feeding, winter feeding and active migration. These can be used to classify probable behaviour throughout the annual cycle, highlighting the likely functional significance of stopovers as refuelling stages.
| S-EPMC2660961 | biostudies-literature
Project description:Puffinus puffinus (Manx shearwater), genomic and transcriptomic data
| PRJEB107000 | ENA
Project description:BackgroundThe loss of species during the Holocene was, dramatically more important on islands than on continents. Seabirds from islands are very vulnerable to human-induced alterations such as habitat destruction, hunting and exotic predators. For example, in the genus Puffinus (family Procellariidae) the extinction of at least five species has been recorded during the Holocene, two of them coming from the Canary Islands.Methodology/principal findingsWe used bones of the two extinct Canary shearwaters (P. olsoni and P. holeae) to obtain genetic data, for use in providing insights into the differentiation process within the genus Puffinus. Although mitochondrial DNA (mtDNA) cytochrome b sequences were successfully retrieved from four Holocene specimens of the extinct Lava shearwater (P. olsoni) from Fuerteventura (Canary Islands), the P. holeae specimens yielded no DNA. Only one haplotype was detected in P. olsoni, suggesting a low genetic diversity within this species.ConclusionsThe phylogenetic analyses based on the DNA data reveal that: (i) the "Puffinus puffinus complex", an assemblage of species defined using osteological characteristics (P. puffinus, P. olsoni, P. mauretanicus, P. yelkouan and probably P. holeae), shows unresolved phylogenetic relationships; (ii) despite the differences in body size and proportions, P. olsoni and the extant P. puffinus are sister species. Several hypotheses can be considered to explain the incipient differentiation between P. olsoni and P. puffinus.
| S-EPMC3013140 | biostudies-literature