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ProteomicsDietary protein in vitro digest (LC-MS)
16 dietary protein preparations were digested according to a standardized invitro digestion (InfoGest) protocol, simulating gastrointestinal digestion. Resulting oligopeptide mixtures were subsequently analyzed by UPLC-MS using DDA shot-gun detection. Peak intensity data from MS1 spectra were obtain...
ORGANISM(S): Bos taurus (Bovine) Pisum sativum (Garden pea) Solanum tuberosum (Potato) Zea mays (Maize) Triticum aestivum (Wheat) Saccharomyces cerevisiae (Baker's yeast) Gallus gallus (Chicken) 
2021-09-09 | PXD021577 | Pride
Dietary protein  in vitro digest  lc-ms  de novo 
MetabolomicsMicrobial liberation of N-methylserotonin from orange fiber in gnotobiotic mice and humans
Plant fibers in byproduct streams produced by non-harsh food processing methods represent biorepositories of diverse, naturally occurring, and physiologically active biomolecules. To demonstrate one approach for their characterization, mass spectrometry of intestinal contents from gnotobiotic mice, ...
2022-07-28 | MTBLS2331 | MetaboLights
GenomicsNucleosome mapping of Tetrahymena thermophila chromatin in vivo and in vitro
A conserved hallmark of eukaryotic chromatin architecture is the distinctive array of well-positioned nucleosomes downstream of transcription start sites (TSS). Recent studies indicate that trans-acting factors establish this stereotypical array. Here, we present the first genome-wide in vitro and i...
ORGANISM(S): Tetrahymena thermophila 
2015-07-30 | E-GEOD-64061 | biostudies-arrayexpress
MetabolomicsDecreasing peptide deformylase activity is a beneficial strategy for increasing formaldehyde resistance in Methylobacterium extorquens
Formaldehyde is a highly toxic metabolite that can cause extensive damage to DNA and proteins, and strategies to mitigate formaldehyde toxicity are poorly understood. Methylotrophic bacteria, such as Methylobacterium extorquens, thrive on one-carbon compounds as sole sources of carbon and energy. Th...
2026-10-05 | MTBLS15927 | MetaboLights
TranscriptomicsMicroarray analysis of HCT‑116 cells during in vitro culture over time
Human cancer cell lines are frequently used in controlled culture systems to investigate cancer biology. However, extended cultivation can introduce genomic and transcriptional instability. The cell line HCT-116 is a well characterized and widely used model for colorectal cancer. To assess transcrip...
ORGANISM(S): Homo sapiens 
2026-04-07 | E-MTAB-16637 | biostudies-arrayexpress
UnknownOptimizing INFOGEST Digest Conditioning for Reliable In Vitro Assessment of Nutrient Bioavailability Using Caco-2 Cell Models.
Not available
S-EPMC12844764 | biostudies-literature
GenomicsEarly life antibiotics influence in vivo and in vitro mouse intestinal epithelium maturation and functioning
Early life antibiotics influence in vivo and in vitro mouse intestinal epithelium maturation and functioning
PRJNA721939 | ENA
ProteomicsFusarium graminearum in vitro secretome
The plant pathogenic fungus Fusarium graminearum (Fgr) creates economic and health risks in cereals agriculture. Fgr causes head blight (or scab) of wheat and stalk rot of corn, reducing yield, degrading grain quality and polluting downstream food products with mycotoxins. Fungal plant pathogens mus...
ORGANISM(S): Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) (Wheat head blight fungus) (Fusarium graminearum) 
2015-10-06 | PXD002786 | Pride
Fusarium graminearum Protease Peptidase In vitro. Secretome 
UnknownGastrin and Nitric Oxide Production in Cultured Gastric Antral Mucosa Are Altered in Response to a Gastric Digest of a Dietary Supplement.
Not available
S-EPMC8520902 | biostudies-literature
GenomicsMyrobalane fruit extracts modulate immunobiochemical pathways in vitro
Myrobalane fruit extracts modulate immunobiochemical pathways in vitro
PRJNA1144416 | ENA
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